Panicum virgatum (switchgrass): 120711106
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Entry
120711106 CDS
T07260
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120711106
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120711106
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120711106
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
zf-rbx1
zf-C3HC4_3
zf-ANAPC11
AF_0924
Prok-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
120711106
NCBI-ProteinID:
XP_039852454
LinkDB
All DBs
Position
6K:complement(695045..699049)
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AA seq
507 aa
AA seq
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MTCPRRWRSFPLCFFLVIFLMAQLGACNVVLMANNTTLSFDDVEATFTPAVKGSGVNGAL
YAAEPLDACSPLRTKAVKGSVSPFVLVIRGGCQFDDKVRNAQNAGFKAAIVYDNEDNGVL
VSMAGSSSEVHIYAVFISKASGVVLKKYSGQTEAELWIIPTYENSAWSIMAISFISLLAM
SGVLATCFFVRRHQIRQDRARIPRAREFHGMSSQLVKAMPSLIFTKVQEDNCTSSTCAIC
LEDYTVGEKLRVLPCRHKFHAACVDLWLTSWRTFCPVCKRDAKAGTSNPPVSESTPLLSS
AIRLPPESTALASFRSTVGASPPRPISRHPSSQSISRNYSISGSSIPRTPNLNRSYANSP
PTCASASNADLANMSSSWSRTSHLASAHSLRGGHLSPPINFSYISPHVSCSGYGSPSRYI
GSSQVPHGSPSYYTGSSVQRHPYLRHCILSGPSLFTMVPPSPQQTQLQHGGDSETSLSAA
ASTQSFRQLYLQHCPDSDTSSQSLPGC
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgacttgtccaagaagatggagatcatttcccctttgtttctttctggtgattttcctc
atggctcagctgggagcttgcaatgttgtactcatggcgaacaacacaaccttgtcattc
gatgatgtcgaggctacctttactccagcggtgaaaggttcaggtgtaaatggtgcactt
tatgctgctgaacctctggatgcatgcagtccattgagaactaaagcagttaaaggctct
gtctcgccgtttgtgttggttataagaggtggttgccaattcgatgacaaagttagaaat
gcacagaatgctgggttcaaggctgctatagtatatgacaatgaagacaatggcgtcctt
gtttcaatggctggaagctcgtctgaagtccacatatatgcagtgttcatctctaaggca
tcaggagtggtgttgaagaaatattcaggtcaaactgaagcagagttgtggataatacca
acctatgagaactcagcttggtcaatcatggcaatttcgttcatatcactgcttgctatg
tctggtgtcctggccacttgcttttttgtgaggagacaccagataagacaggacagggct
cgaatcccccgagctcgagagttccatggaatgagcagtcaattagttaaagcaatgcca
agtctcatcttcacaaaagttcaagaagataattgtacatcatcaacatgtgccatttgc
ttggaagattacactgttggagaaaagctaagagtgctaccttgtcgacacaagttccat
gcagcctgtgttgacctgtggcttacctcatggcgaacattctgccctgtatgcaagcga
gatgcaaaggctggaacatcaaacccccctgtatcagagtctacccctttgctttcttct
gcaattcggctacctcctgaatcaactgctttggcctccttccggtcaacagtgggagca
tctcctcctaggccaatcagccggcatccttcatcgcaatccatatctcgcaattactcc
atttcaggttccagtattccccgcacccctaacctcaataggtcttatgcaaactcacct
cccacctgcgcaagcgcaagcaatgcagaccttgcaaatatgtcatcctcatggtctcgc
acatcacaccttgcatccgcacattctctgcgtggtggccatttgtctccaccaatcaac
ttcagttatatttcaccacacgtctcctgttctggctatggatcacctagtcggtatata
ggttcatcacaagtgccccatggatctccgagttattacactggatcttcagtgcagcgg
catccttacctgcggcactgcattttgtccggcccgagcctgttcaccatggtgcctcca
tcaccgcaacagacccagctgcagcacggtggcgactcagagacaagtttatcagctgct
gcatcaactcagtcattccgtcagctctacctacagcactgtcctgattctgacacatca
tctcagtcgctaccagggtgctga
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