Panicum virgatum (switchgrass): 120711122
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Entry
120711122 CDS
T07260
Name
(RefSeq) ribosome maturation protein SBDS-like
KO
K14574
ribosome maturation protein SDO1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120711122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120711122
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120711122
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SBDS_N
SBDS_domain_II
SBDS_C
Motif
Other DBs
NCBI-GeneID:
120711122
NCBI-ProteinID:
XP_039852469
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All DBs
Position
6K:893288..900266
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AA seq
355 aa
AA seq
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MSRTLVQPVGQKRLTNVAVVRLRKHGQRFEIACFPNKVLSWRACVEKDLDEVLQSHTVYS
NVSKGVLAKSKDLVKAFGTDDQTKICIEILEKGELQVSGKEREAQLSSQFRDIATIVMEK
TINPETRRPYTITMIERLMHEIHFAVDPNLTSKEQALKVIKKLIEHFPIKRAPLRVRFTA
PKSNFAGLMEKVAEWNATVISKDESGTQPSIVCEIEPSILHSCEERLKDVQGRVEVLSVS
AHAEGGPSVEHHDNVEVPQAAPAKESDAVAEISETMQKQSISSESQGNAQGKQQRRCKEC
DVLVDDKQYREHCKSGWHKHNYTRHKNGLPPLSQEECVVEMELADSKKDLKDYDF
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggacgctggtgcagccggtggggcagaagcgcctcaccaacgtggcggtggtg
cggctgcgcaagcacggccagcgcttcgagatcgcctgcttccccaacaaggtgctctcc
tggcgcgcctgcgtcgagaaggacctcgacgaggtgctccagtcccacaccgtctactcc
aacgtctccaagggcgtcctcgccaagtccaaggacctcgtcaaggcattcggcaccgac
gaccagaccaaaatctgcatcgagattctcgagaaaggggagctccaggtctccggcaag
gagagggaggcgcagctctccagccagttccgcgacatcgccaccatcgtcatggagaag
accatcaacccggagacgcgccgaccctacaccatcactatgatcgagcgcctcatgcac
gagatacactttgccgtcgaccccaacctcacttccaaggagcaggctctaaaagttatc
aagaagctcatcgagcactttcccataaagcgagcaccactgagggtgcggttcactgca
ccaaagtccaactttgcaggccttatggagaaggttgctgaatggaatgctactgtcatt
tcaaaggatgaatctggtactcagccatctattgtatgtgagattgagccgtccattttg
cactcatgtgaggagcggttgaaggatgtgcaagggagagtggaagtgctatccgtctca
gctcatgcagaaggtggcccatctgtggagcaccatgacaatgttgaagtgccgcaagca
gcgcctgcaaaggagtctgatgctgttgctgagataagtgagacaatgcaaaagcagagc
atctcaagtgaaagccagggtaatgcacaagggaagcagcagagaagatgcaaggaatgt
gacgtactcgtggatgacaagcaatacagagaacactgcaagagtgggtggcacaagcac
aattacacgcgccacaagaacgggctaccgcctctcagccaagaggagtgcgtggtggag
atggaactggccgactccaagaaggatcttaaagactacgatttctga
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