Panicum virgatum (switchgrass): 120711161
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Entry
120711161 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120711161
KO
K13210
far upstream element-binding protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711161
03041 Spliceosome [BR:
pvir03041
]
120711161
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
120711161
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120711161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
Exo_endo_phos
KhpA-B_KH
KH_2
Exo_endo_phos_2
SLS
Motif
Other DBs
NCBI-GeneID:
120711161
NCBI-ProteinID:
XP_039852541
LinkDB
All DBs
Position
6K:1456373..1461561
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AA seq
930 aa
AA seq
DB search
MADPDAAPLTPPPELVAPEEHQAAADSAAAAAQDEAAAGEVDHKRKLEEVGADVEANGDG
EDAKRPRVDGETDASAGTEQQNDGSSVNVEEPAAAEDGNVAPTEGVADGDNGTVAASEVL
PLEPTPEAAAGARQQEGDAATASQETSHKIEVPNSKVGVLIGGALHRHPGVVKNEQGSSH
LTRCVRRARKLVEPTRIRIGSWNVGLLTGRLIELVDTAIRRRVNILCVQETKWKGQKAKE
VDNTGFKLWYTGTTANRNGVGVLIDKSLKNDVVDVRRRGDRIILVKLVVGDLVLNVITAC
APQVGHDESAKRQFWEDLDDMVRAVPIREKLFIGGDLNGQVGTANIGFEAVHGGFGFGSR
NQEGEEVLNFALAFDLLIANTFFRKRESHLVTFNSGQHTSQIDFILTRRKDKRTCLDCKV
LPGECVVSQHKLVVADFRFQVHARRDKQAKFARTKWWKLKGKMSALTQSVELVGTLASVD
KAEQLIKSVIAEAEAGGSSALIARGFGSGQSGSGQFEMTVPDNKVGLIIGKGGETIKGLQ
TRSGARIQLIPQHPPEGVTLTERTVRVTGNKKQIEVAKDLIKQAMNQNFSKHANQSGGYG
PQGYRPQGHGEALQWGPRSQSQPGYGYPPRGMPPPQNYNPAYGGYPQQGPPRGGMGWDQR
QSPPPHPSYQGGGSDYYKQGSQPYDSQPPSYPPGPGNYNSYGQSQAPGYGQPPYPQHAPQ
QNYGHGYGDPRYNAPPPNQYYGQPPMGPQQGYPQQADPYARPSYSGLGQWAPRAAPAADG
SYQPPPASDGPPSQQPPAYGQTYGAATAPDGYAQQGYPQQSGQAPAPYSQNAPAAPGYPQ
QGTQQGGYAQYPQTQPAYGDQAAQANANYGYQGAQADPNYGSAYPQAGYGPPAPAAGPAG
YASAPAVGQAGYACAPAAGQPAAYVQAGYT
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccccgatgccgcgccgctgaccccgccgccagagttagtagcccccgaggag
catcaggcggcagccgactccgccgccgccgcggcgcaggatgaggccgcggcgggcgaa
gtcgatcacaagaggaagcttgaggaggtcggcgccgacgtggaagcgaacggcgacgga
gaggacgccaagcgaccccgcgtggacggcgagaccgacgcctccgcagggactgagcag
cagaacgatgggtcctccgtgaatgtcgaggagcccgcagctgcggaggacggcaacgtt
gcccctaccgagggggtggcagatggtgacaatggcacggtcgcggcttctgaggttctg
ccactcgagcccacaccggaagcagcagctggagctcgacagcaagaaggtgatgcagca
actgcctcgcaggagacatctcataaaattgaagtgcccaatagcaaggttggtgtactg
attggaggcgcgctacatcggcacccgggtgtagtgaaaaatgagcaagggtcttcgcat
ctaactcggtgtgtgcgaagggcaaggaagctagtcgagccaactaggattcgtataggt
agttggaacgtagggttgcttacaggtaggttaatagagttagttgatacagcgattagg
aggcgtgtaaatatcttatgcgttcaagagactaaatggaagggtcaaaaggcgaaggag
gtggacaatactggcttcaagctttggtacacaggtacaactgcaaataggaatggagtg
ggagttttgattgataagagcctcaagaatgatgtggtggatgtcagaaggcgaggagat
aggatcatcttagtcaagctcgttgttggtgatttagtcttgaacgttattactgcatgt
gccccccaagtaggccacgatgagagtgctaagaggcagttctgggaagacttagatgac
atggttagagctgtacctattagggagaagcttttcataggaggagatctcaatggtcag
gtaggtactgcaaatataggtttcgaggcggtacatgggggttttggttttggtagtaga
aatcaggagggggaggaagtcttgaactttgcgttagcttttgacctattgatagccaac
actttctttagaaagagagagtcccacttagtgacctttaatagtggccaacacactagc
cagatcgactttatcctcacaagaagaaaggataaacgaacgtgcctggactgtaaggtg
ttacccggagagtgtgtagtttcccaacataagctggtggtggccgatttccgctttcag
gtgcatgcccgtagggataaacaagctaagtttgcaagaacaaagtggtggaagctaaaa
gggaagatgtccgctctgacccagtcggttgaactagttggaacccttgcaagtgttgat
aaagccgagcagcttattaagagtgttatagctgaggctgaggctggcggttcctctgct
ttaatagctagaggctttggaagtggacagtcaggatccgggcagtttgagatgacagtt
cctgataacaaggttggcctgattatcggaaaaggtggtgagacaattaaaggcctacaa
acaagatctggtgctcgtattcagttgataccccaacatcctccagagggtgttacattg
actgaacgaactgtacgtgtaactgggaataagaaacagattgaagtcgcaaaggatctg
atcaagcaagctatgaatcagaatttctcaaagcatgcgaaccaatctggtggatatggt
ccgcaaggttaccgccctcagggtcatggtgaggctttgcagtgggggccacgttctcaa
agtcagcctggctatgggtatccaccaagaggtatgcctccacctcagaactacaaccca
gcctacggtggttacccacagcagggaccaccaagaggcggcatgggctgggaccaaagg
cagagccctccgccccatccttcatatcagggtggtggttctgactactacaagcaggga
tctcaaccatatgatagccagccaccaagctaccctcctggaccagggaactacaacagt
tatgggcaatctcaagctcctggctatggacaacctccatatccgcaacatgcgcctcaa
cagaactatggccatgggtatggtgatcctagatacaatgctccgcctccaaaccagtac
tatgggcagccaccaatgggcccccagcaaggctatcctcaacaggcagatccttatgca
aggccttcatacagtggactgggacaatgggcgcccagagctgctccggctgcagatggc
tcctaccagccaccacctgcatctgatggaccaccctcccagcaacctcctgcttatggc
caaacatatggcgcggcaactgcacctgatgggtatgctcaacagggctacccacagcag
agtgggcaagcaccagctccatatagccagaatgcaccagcagcaccaggctatcctcag
caaggcacacagcaaggtggctatgcacagtacccgcaaacccaaccagcatatggtgat
caagcagctcaagccaatgcgaactatggctaccagggagctcaagcagatcccaactat
ggaagtgcctacccacaagcaggatatggacctcctgctccggcagctggtccggctggt
tatgcttctgcaccagcagttggtcaggctggttatgcttgtgcaccagcagctggccag
cctgcagcatatgtccaggcaggatacacctaa
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