Panicum virgatum (switchgrass): 120711184
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Entry
120711184 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase CHIP-like
KO
K09561
STIP1 homology and U-box containing protein 1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120711184
04120 Ubiquitin mediated proteolysis
120711184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120711184
04131 Membrane trafficking [BR:
pvir04131
]
120711184
04121 Ubiquitin system [BR:
pvir04121
]
120711184
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120711184
Chaperones and folding catalysts [BR:
pvir03110
]
Other chaperones and cochaperones
Others
120711184
Membrane trafficking [BR:
pvir04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120711184
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120711184
Multi subunit type E3
STUB1-CHIC2 complex
120711184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U-box
TPR_1
TPR_2
TPR_11
TPR_17
TPR_8
TPR_14
ANAPC3
TPR_16
TPR_BSK1_C
zf-NOSIP
TPR_9
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
120711184
NCBI-ProteinID:
XP_039852573
LinkDB
All DBs
Position
6K:1729693..1733849
Genome browser
AA seq
275 aa
AA seq
DB search
MAPAPADGGAESQRQADLLKQEGNALFRKERLSAAIDAYTGAITLCPNVAVYWTNRALCY
KKRSEWAKVEEDCRRAIQLDSQSVKGHYMLGLALVNSQRLSEGIKALEKSLELGRGAHPA
SYMVEEIWQELSKAKYIEWEGLSRERASQLQKLKVVCKEALRNYNSLSNPAADAPEEQLN
ELEEVFKKAAKTDTPAEVPDHLCCKITLDIFRDPVITPSGVTYERAVLLDHLQTVGKFDP
LTREALEPHQLVPNLAIKEAVQAFLSEHGWAYKIR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgccggcggacggcggggcggagtcgcagcggcaggcggacctgctcaag
caggagggcaacgccttgttcaggaaggagcgtctcagcgccgccatcgacgcctacaca
ggggccatcacactctgcccaaatgttgcagtatattggaccaaccgagcactttgctat
aagaagcggagtgagtgggctaaggttgaggaagattgtagaagggctatccagcttgac
agccaatctgttaagggacattacatgcttggcctagcacttgtcaacagccaaagatta
tctgaaggaatcaaagcactggagaagtccttggagcttggaaggggtgcacatcctgca
agctacatggttgaggagatctggcaagagctttctaaagcaaagtacattgagtgggaa
ggcttatcaagagaacgagcctctcaattgcaaaagctgaaggtagtatgtaaagaagct
cttaggaattacaacagccttagtaatcccgctgctgatgcacctgaagaacagctaaat
gagcttgaggaagttttcaagaaagctgcaaagactgatactccagcagaagttcctgac
catctctgttgcaaaattacacttgatatcttcagagatccagtgatcaccccaagtgga
gttacatatgagagggctgtacttcttgatcatcttcaaacggtggggaagttcgacccc
ttgacccgtgaggcgcttgaaccacaccaactagttccaaatcttgccatcaaggaagct
gtacaggcatttttgagtgaacatggttgggcatacaagataagatga
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