Panicum virgatum (switchgrass): 120711392
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Entry
120711392 CDS
T07260
Name
(RefSeq) small nuclear ribonucleoprotein E-like
KO
K11097
small nuclear ribonucleoprotein E
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120711392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711392
03041 Spliceosome [BR:
pvir03041
]
120711392
03032 DNA replication proteins [BR:
pvir03032
]
120711392
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
120711392
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
Sm proteins
120711392
U2 snRNP components
120711392
Complex B
U1 snRNP components
120711392
U4/U6.U5 tri-snRNP components
120711392
Complex C
U2 snRNP components
120711392
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120711392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
120711392
NCBI-ProteinID:
XP_039852822
LinkDB
All DBs
Position
6K:5111011..5117697
Genome browser
AA seq
88 aa
AA seq
DB search
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI
NVKKNTRKSLGRILLKGDNITLMMNTGK
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaccaaggtccagcgtatcatgacccagcccatcaacctcatcttccggttc
ctccagagcaaagcgcgcatccagatctggctgttcgagcagaaggacctccggattgag
ggtcgcatcatcggatttgatgagtacatgaacttggtccttgatgatgctgaggaaatc
aatgtaaagaagaacactaggaaatcattgggtcggatacttctgaaaggtgacaacata
actttgatgatgaacactggcaagtga
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