Panicum virgatum (switchgrass): 120711422
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Entry
120711422 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120711422
09124 Replication and repair
03420 Nucleotide excision repair
120711422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120711422
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120711422
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120711422
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120711422
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
120711422
NCBI-ProteinID:
XP_039852860
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Position
6K:5681314..5689696
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AA seq
601 aa
AA seq
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MGSMTIGAKYKTTLKDPGTPGVLRMNDDKFTFTPNDPRSAMKLNVDFRSIKGHKFNKVDG
NKPALLNLSKDSDKGGGYMFEFDNVGNRDLCRDFVAKVLGKHQGVVPPRPTAAPENSVAS
AGLEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDQANKASKQ
RPGFKTAMSDVRPSADGRTNKVTFNLTTEMIHQIFAEKPAVRRAFLDFVPKKLTDKEFWT
KYCRAEYLLRTKNTVAATAEAAEDEELAVFLKNDDILAKEAKLKIKQVDPTLDMEADAGD
DYIHLPDHGILRDGSKETLDTDSELAKRTLSQDLNRHAAVVLEGIASDVELTDAKSVAEA
LARSKKEPPSTSTVDDSSRERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQAN
ALRSLGGSNDGRKARNYSLSTEEAFHYLTDQISSIKVNKLNYPVIQSDMALKVLNELNEG
ISRSRRLNLKNPQEGLLGRVPQHTQDELMDHWTAIQELLRHFWSSYPITSAVLYNKVQRV
KDAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQKSAKAGNKPNG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgatgacgatcggcgccaagtacaagacaacgctcaaggaccccggaaccccg
ggcgtcctccgcatgaacgacgataagttcactttcactcctaatgatccacgctcggca
atgaagctcaatgttgatttccgaagcattaaaggtcacaagttcaataaagtagatggt
aacaaaccagcattattgaatctttcaaaagattctgacaagggtggaggttacatgttt
gagtttgacaatgttggtaaccgtgacctatgtcgagactttgtagctaaggttttaggc
aaacatcaaggggtagtgccccctcgaccaactgctgctcctgaaaactcagttgcttct
gctggtctggaacagctcagtgctgctgaagtggaacggcgggtgaaactgttgcgagaa
gacagtgaattgcagaaattacataagaagtttgttcttggaaatattctgcaagaatct
gaattttgggcaacaagaaagaatttgctagatgatcaagcaaataaagcatctaaacaa
aggccaggcttcaagactgcgatgtcagatgttaggccatcagctgatggtcggacaaac
aaggttactttcaatctcacaactgagatgatacatcagatttttgcagaaaaacctgct
gttcgtcgagcatttttagattttgttcccaaaaagttgacagataaagaattttggaca
aaatactgtagagctgaatatctgctcaggacaaaaaacactgtggcagcaacagctgag
gctgctgaagatgaggaattagctgtcttcctgaagaatgatgatatactggccaaggag
gcaaagctgaagataaaacaagttgatccaacgttagacatggaggcggatgctggagat
gattacatccatcttccggatcatgggattctccgtgatggtagcaaagagacacttgac
actgacagtgagttggcaaagaggacactgtctcaggacctgaatcgtcatgccgctgtt
gttcttgaagggatagcttcagatgtggagctgactgatgcaaagagtgtagcggaagcc
cttgcaaggtccaagaaggaaccaccttccacttctactgttgatgattctagccgtgag
agactggtgaaggtggccagaatgacggagatagaggatttgcaagctccacgaagcctt
ccatatgcaccactttgtataaaggatcctagggagtattttgattcccaacaagcaaat
gctctgagatctttaggtggcagcaatgatggaagaaaagcccgtaattacagcttgagc
actgaagaagcgttccattatttaacggatcaaatatcttctattaaagttaataagttg
aactatccagttattcagtcagatatggctcttaaggttcttaatgaattgaacgaaggg
atttcacgttcaaggagactcaacctcaagaatcctcaagagggtctccttggtcgagtg
cctcaacatacgcaggatgagcttatggatcactggacggctatccaggaattgctacgc
catttttggtcatcatatcctataacaagtgcagtcctttataataaggttcaaagagtt
aaagacgcaatgacacagatatatcaaaagttgcaggctataaaggaatctgcgcagcct
gatgtaaggcatgaaatatctcggctagtaaaaccaatgactcaggccttggacgcggcc
ttcagccatgatctggagcagcagcagaaatcggcgaaggccgggaacaaacccaacgga
ttttga
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