Panicum virgatum (switchgrass): 120711425
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Entry
120711425 CDS
T07260
Name
(RefSeq) DNA topoisomerase 1 beta-like isoform X1
KO
K03163
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120711425
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120711425
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Topoisomerases
120711425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Topoisom_I_N
Topo_C_assoc
RodZ_C
Motif
Other DBs
NCBI-GeneID:
120711425
NCBI-ProteinID:
XP_039852866
LinkDB
All DBs
Position
6K:5816200..5822469
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AA seq
903 aa
AA seq
DB search
MAVANPNKALLFENDDEDGPISFKRTSASVKTSRPTPSKQEGSSGGTGIPVRSSKPVAPN
QQKNGMSGSASRLLHLKPPSSSPNHQPSGSCQPNSSVENNSRSNSSDKGKLKRPLVKEEN
SDDSDDEVPIGLRRKVEGKKLKRVDEKADDSDDDKPLSLKINSSKMSSNSASKPVLQKTA
AKVEQPDEDSDDDKPLASRLPTNAASKRGGNVSEDSEDEKPLAARFTKVSGSGNLKSASS
SKGLNNDTNGPRNLGKRPLDNSNQTSLALKKAKPSNVSASASVKREIKADDNDNTPLAQR
LKMGESSKGKTSAKNVIKKSPASMKKNIKKMKGKVKTKKTMKNQFSKTMKVPPGSGGGQK
WTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMRDTDYATRPTFIDNF
FTDWRQLLGKNHSIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALREDKLKQEEEYMW
AVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGREAPVPECPIPGE
RWKEIRHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHIQKIR
DNYTKDFRSKDETKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKIDNVTCLPPNK
IQFDFLGKDSIRYFNTVEVEELVYKAIEGFRRGKPPGYDLFDKLDTTRLNAHLKDLMPGL
TAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMT
RLNEKIDDLKAQRDELKVDLGKAKKGKPLGNDKDGKPKKNSPPEQIEKKISAIETKIEKM
EMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKTLLAKFGWAMDVDPE
FRF
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgccaaccctaacaaagctcttctattcgagaatgacgacgaagacggcccg
atttcgttcaagaggacgagcgcctctgtgaagaccagcaggcccaccccctccaagcag
gagggttcgtcaggaggcactgggattcctgtcaggagctcgaagcctgtggctccgaat
cagcagaagaacgggatgagcggcagtgcatcgaggctgctgcatttgaagccgccgtcg
tccagccctaaccatcagccttccgggtcttgccagccaaacagttcggtagagaataat
tcaaggagtaacagcagtgacaagggcaaactgaaaagaccccttgtgaaagaagagaac
tctgatgattcagatgatgaggtgccaattgggttaaggagaaaagttgaggggaagaag
ttaaagagagttgatgagaaagcagatgattcagatgacgacaagccgttgagtctcaag
attaactcatccaagatgtcttccaacagcgcgagtaagcctgttttgcagaaaactgcc
gcaaaagtcgagcagcctgatgaagattcagatgatgacaaaccattggcaagcaggctg
cccactaatgctgcttcaaaacgtggaggtaatgtctctgaagattctgaggatgagaag
ccattggctgcccgatttacaaaagtttctggaagtggaaacctaaaatcggcttcttcc
agcaaggggttaaataatgatacaaacggcccacggaatttgggtaaaaggcctctagat
aacagtaaccaaacaagtttagctctcaagaaggcaaaaccttcaaatgtttcagcttca
gcaagtgttaaaagagaaatcaaggcagatgacaatgacaacacccctcttgcgcaaagg
ctgaagatgggtgagtcttcgaaaggcaagacatcagcaaagaatgtcatcaagaagagt
cctgcttctatgaagaagaacatcaagaaaatgaaagggaaagtgaagacaaagaagaca
atgaaaaaccagttttcaaagactatgaaggtccctcctggatctggtggtggacagaaa
tggactaccttggagcacaatggtgttattttccctcctccgtacaagcctcatggtgtc
aaaatgctttacaatgggcaacctgttgatctgacaccagaacaagaggaggttgcaaca
atgtttgctgtgatgagagacacagactacgcgaccaggccaacattcattgataacttt
ttcactgattggagacagctccttggtaaaaaccatagtattaagaaattcgagctttgt
gatttcaccccgatatatgaatggcacctcagagagaaggagaagaagaagcagatgaca
tcagaggagaaaaaagcgttgcgggaagacaagttgaagcaagaggaggagtacatgtgg
gctgttgtagatggtgttagagagaaggttggcaatttcagagtagaaccacctggctta
ttcaggggacgtggagaacacccaaagatgggaaaactgaagcggcgcattaaaccaagc
gatattacaataaatatcggaagagaggctccagtccctgagtgtccgatacctggagaa
agatggaaagaaatcagacatgacaatactgttacatggttggccttttggaatgatcca
attagccaaaaagatttcaagtatgttttcctggcagcaagtagctcacttaaggggcaa
agtgacaaagagaaatatgagaagtccagaaagttaaaggatcacatacaaaaaattcga
gacaactacacgaaggatttcagaagcaaagatgagacaaagaggcaaattgctgtggca
acataccttattgataaactagcccttagggcaggcaatgaaaaggacgatgatgaagct
gatactgttggttgctgtacgctaaaaattgataatgttacttgtttgcccccaaataag
atccagtttgactttctgggtaaagattctataagatattttaacaccgtagaggttgaa
gaacttgtgtacaaggcgattgagggtttccgccgtggaaagccaccgggatatgatctc
tttgacaaacttgatacaactaggctaaacgcacacctgaaggacctgatgcctgggctt
actgcaaaagtgttccgtacatataatgcttccatcacattggatgacattttgcacaag
gaaacagaagatggaactcttctcgaaaaaattgctgtatatcagcgcgcaaacaaagag
gttgccataatctgtaaccatcaacgtagtgtgtcaaaatcacatgaatcccagatgacc
agacttaatgaaaagattgatgatttaaaggcccagagagatgagttaaaagttgacttg
ggcaaagcaaagaaaggaaagcctctgggcaatgataaagatggaaagccaaagaagaac
tcgccccctgaacagattgaaaagaagatttcagctattgaaaccaagattgagaagatg
gagatggataagaagataaaagaggatttgaagacagttgcactcggaacatcaaagatc
aactaccttgatcctagaattactgtggcatggtgcaaacgccatgaagtccccatcgag
aagattttcaacaaaacgcttcttgcgaaattcggatgggcaatggatgtcgatccggaa
ttcagattctag
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