Panicum virgatum (switchgrass): 120711436
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Entry
120711436 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120711436
09124 Replication and repair
03420 Nucleotide excision repair
120711436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120711436
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120711436
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120711436
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120711436
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120711436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Ntox47
CCDC-167
MIF4G_like_2
TACC_C
Motif
Other DBs
NCBI-GeneID:
120711436
NCBI-ProteinID:
XP_039852886
LinkDB
All DBs
Position
6K:complement(5927116..5936103)
Genome browser
AA seq
1837 aa
AA seq
DB search
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQHDTDEPVKKRGGCGAQQPNITV
DGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVFNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQIN
LIRFSAWHLETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMERINETISKAKNDVKELIKKAQDKQL
EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKAEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQ
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKMKESAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRIT
NDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKLGKVNRFEQDDGFKA
DQEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH
LRGVTENIMLGQLAPIGTGGCSLYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTP
YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT
PEKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKY
SPSHAYSPSSPRMTPYSQTSPSYSPTSPTYSPTSPSYSQPSPSYSPTSPFNTSGGPSPDY
SPTSPNYSPSGSYSPTAPGYSPSSTGQANDKEDESTR
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtccagctcgtgcagttc
ggcatcctcagccccgacgagatcagacaaatgtcggtggttcaaatagaacatgcagag
acaatggagagggggaagcctaagcccggtgggctcagtgaccctcgattggggaccatt
gaccggaaaatcaagtgtgagacatgcatggcaggcatggcggagtgtccaggccacttt
ggacaccttgagcttgcaaagcccatgttccacatcggtttcattaaaactgtgctgtct
attatgcgctgcgtctgctttaactgctccaagatcctcgcggatgaggatgataccaaa
tttaagcaggctctgaaaatcaggaatccaaagaatagattgaagagaatatatgatgct
tgcaagagcaaaaaagtctgtgctggtggcgatgaccttgatgttcaggagcagcatgat
actgacgagcctgttaagaaaagaggtggttgtggtgctcagcagccaaatattacagtt
gatggtatgaagatggttgcagagttcaaagctccaaagaagaaaagtgatgatcaggat
caactccctgagccagtggaacgaaagcaaatcctctccgctgagagggtctttaacgta
cttaagcgtataagtgacgaggactgccttctgttgggtctaaatcccaaatttgcccga
cctgattggatgatacttcaagttcttccaattcctcctccccctgttagaccatctgtc
atgatggacacttcttccagaagtgaggatgatttgactcatcaattagctatgataata
cggcataatgagaatttgagaaggcaagaaagaaatggtgctccagctcacattataacg
gagtttgctcagttgttgcaatttcatattgcaacgtactttgataatgagcttcctggt
caacccagggctacacagcgttctggaaggcctatcaaatcaatttgcagcaggcttaaa
gcaaaagaaggccggattagaggaaatttgatgggcaagcgtgttgatttctcggcccgt
actgttatcacacctgatccaaatataaacattgatgaactgggagtaccctggagtatt
gctttaaatctgacatatcctgaaacagttactccatataacattgagaggttgaaggaa
cttgtggaatatgggcctcaccctcccccagggaagacaggtgcaaagtacatcattagg
gaagatggtcagaggcttgatcttcggtatgtgaagaaaagcagtgatcagcatttggag
ctgggttacaaggtggagaggcacctcaatgatggggattttgttcttttcaaccggcaa
ccaagtcttcataaaatgtctatcatggggcatcgcatcaaaattatgccctactcaact
ttccggttgaacttgtctgtcacttcaccatataatgctgattttgatggggatgaaatg
aatatgcatgtgcctcagtcatttgagaccagggcagaagttctagagttaatgatggtg
ccaaaatgcatcgtgtccccacaatcaaataggcctgtcatgggtattgtccaggacaca
ctgcttgggtgtcgaaaaattactaaaagggacacactcattgaaaaggatgtatttatg
aacatcttgatgtggtggcaagactttgacggaaagattcctgcacctgctattttgaaa
cctaggcctatttggactgggaaacaagtttttaacttgattatccccaagcaaataaat
ttaattcggttttcagcctggcatttggaaacagaaacaggatttattactcctggtgat
acgatggtcaggatagagaagggagagcttctatctggtaccctttgcaaaaagagtctt
ggaacaggctctggaagtcttatccatgtcatttgggaagaggttggtccagatgctgcc
cgcaagttcttaggtcatacacagtggcttgtcaactattggcttcttcagaatggtttc
agtattggaattggggatactattgctgatgcagccaccatggaaaggattaacgagaca
atttctaaagctaaaaatgatgtgaaggagcttattaaaaaagcacaggacaagcagttg
gaacctgagccaggacgcaccatgatggaatcatttgaaaacaaagtgaaccaggttctc
aacaaggctcgcgatgatgctggaagcagcgctcagaagagcttatctgaaagcaacaat
ttgaaggctatggtcactgccggctcaaaaggcagtttcattaacatttcacaaatgact
gcatgtgtcggacagcagaatgttgagggcaagcggatcccatttggtttcattgatagg
actcttccacattttacaaaagatgactttggtcctgaaagccgtggatttgtggagaat
tcttaccttcgaggcctgacaccacaagaatttttctttcatgctatgggtggtagagaa
ggtcttatcgatactgctgtcaaaacttctgagacaggatatatccagaggagacttgtg
aaggctatggaggacatcatggtgaaatatgatggtactgtaagaaattctctgggggac
gtaattcagttcttgtatggggaagatggcatggatgcagtttggattgaatctcaaaaa
ttggactcattgaagatgaagaaggctgagtttgataatgtattccgttatgagctggat
gatgagaactggaggcccaactacatgcttcctgaacatgttgatgatttgaagaccata
cgtgaattcagaaatgtgtttgaggcagaggttcaaaagctagaagctgatcggttccag
ctcgggactgagattgccacaactggtgacaattcatggcctatgcctgtgaacctcaag
cgacttatctggaatgcccagaagacattcaagattgattttagaagaccttctgatatg
cacccaatggaaattgtggaagcgatagataaacttcaagaaagactgaaggttgtacct
ggtgatgatgctatgagcattgaggctcagaagaatgcaaccttgttcttcaatatcctg
cttcgtagcacatttgctagcaagagggtcttgaaggaatacaggcttacaaaggaagct
ttcgaatgggttattggtgagattgaatctaggttccttcagtctttggtggcccctggt
gaaatgattggatgtgtggctgcacagtccattggagaaccagcaactcagatgactctg
aataccttccattatgctggtgtcagtgccaagaatgtcactcttggggttcccaggttg
agagagattattaatgttgccaagaaaataaagactccatctttgtctgtttacctgaag
cctgaggtgaacaagatgaaagagtcggctaagaatgttcaatgtgctctagagtacacc
acactgcgcagtgtaacccatgccactgagatatggtatgaccctgatcctctaggaacc
atcattgaagaggatgtggagttcgtccggtcatattatgaaatgcccgatgaagatatt
gacccggataagatttctccttggctgctgcgtattgagcttaaccgtgagatgatggtt
gataagaagttgagcatggctgatattgctgagaagatcaaccgtgaatttgatgatgac
ctgtcatgcatatttaatgatgataatgctgataagctcatcctccgtatccgcatcaca
aatgatgacgctccaaagggagaaatacaagatgagtctgctgaggatgatgtcttcctc
aagaagatagagggcaacatgttgacagaaatggctctaagaggcatcccagacatcaac
aaagtgttcatcaaacttgggaaggtcaatagatttgagcaagacgatggtttcaaagca
gatcaggagtggatgcttgatacagaaggcgtgaatctcttagctgtgatgtgtcatgag
gatgtcgatgctacaagaacaacaagtaatcatttgattgaagtaattgaggttcttgga
attgaggctgtccgtcgatctctcttggatgagcttcgggtggttatatctttcgatgga
tcctatgtgaactacaggcatctagccattctttgtgatacgatgacatacagaggtcat
ctaatggctattacaaggcacggtatcaatcgtaatgacactggacctcttatgagatgt
tccttcgaagagactgtcgacatcttgctagatgccgctgtatatgctgaatctgaccac
ctgagaggtgtcacggaaaacattatgcttggtcagcttgcgcctattggtactggaggc
tgttcattatatctgaatgaccagatgttgcaacaggcaatagaacttcaactaccaagt
tatgtcgaaggtctggactttgggatgacaccagcacgttctcccatatccgggacaccc
tatcatgaaggaatgatgtcgccaagttatctgctgagtcccaacatcagggcttccccc
attaatacagatgcttcattctcaccatatgttgggcacatggcattttcaccatttcca
tcaccaggtggctattctccatcttcagggggatacagtccatcttctccggttttcacc
ccagagaaaggatatagccctctttctccatcatacagccctgcatcaccaagttatagt
cccacctcaccatcctatacacctggctctcccacctatagtcctacaagcccaaattac
tccccaacaagtccaacatactcacccaccagtccatcatactcgcccacatctccaagc
tacagccctacatctccaagctacagtcccacttcaccaagctacagcccaacttcacca
gtttatagtccaacctcaccagcatacagccccacatctcccgcatacagccccacatcg
ccatcctatagcccaacctcaccatcctatagccctacctcaccatcctatagccctacc
tcaccttcgtacagccctacatcaccttcgtacagccctacctccccctcctacagccca
acgtcacctgcatacagccctacctcgcctggctacagcccaacatcaccaagttacagc
ccgacatcgccaagctacagtcctacttcgccgagctacaatccttcatcagccaagtac
agcccgtcacatgcttactctccaagcagcccaaggatgactccatacagtcagacatct
ccaagctacagtccaacatcaccaacttactctcctacatcaccatcgtattcacaacca
agtccctcgtacagcccaacgagcccgttcaacacatctggaggacctagtccagactac
agcccaacctctccaaattacagcccaagtggaagctactcccccactgcacccggctac
tccccatcatccacagggcaagcgaacgacaaggaagatgagagcactcgttga
DBGET
integrated database retrieval system
