Panicum virgatum (switchgrass): 120711443
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Entry
120711443 CDS
T07260
Name
(RefSeq) protein PAF1 homolog
KO
K15174
RNA polymerase II-associated factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120711443
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
120711443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
120711443
NCBI-ProteinID:
XP_039852898
LinkDB
All DBs
Position
6K:complement(6066699..6073776)
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AA seq
627 aa
AA seq
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MASYRPYPPPQQHPPPPPPQGGFPPQMNPYAPPPQQQAPYGRMPAPPYHAGAPPPPPPGP
PPPHQPQFNFGPGPPQQPPPPPQMYYQPPPPPYGGTSNPPPPPPSAPPPPPSPPPAAPPP
PPPPPAQPPPAQAPPVPKEQQPKAALPRTETEEERRARKKREFEKQRVEDRKQQQMMRQT
QAHILQKTQQVRTSQQQPSSQSRHHHPPGGSRAAATGSRPASAPNAERFENRLKKPTTFL
CKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRITSLEKNYMPKMIVPEDLGIPLDLLDMS
VYNPPAVQPPIAPEDEELLRDDEVLTPIKQEGIRKKERPTDKGVSWLVKTQYISPLSTDA
AKTSLTEKQAKERRESRMGRNAFLDSLNDREKQIKAIEESFRAAKSRPVHQTKRGMQAEW
VMPLLPDFDRYDDPFVMVNFDGDPTADSEQYNKLERPIRDECESRAVMKSFSVNGSDPTK
QEKFLAYMAPAPHELARDLDDEDDIQYSWLREYHWEVRGDDKDDPTTYLVTFDEEEGARY
LPLPTKLVLQKKKAKEGRSGDEIEHFPVPSRITVSRTAHGGTMERGESSGMHENLKRQRS
PVDDDLDENQKHSRGDVDQYSGEEYSE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtacaggccgtacccgccaccgcagcagcacccgccgcccccgccaccgcag
ggcggcttcccgccgcagatgaacccgtacgcgccgccgccgcagcagcaggcgccgtac
ggccggatgccggcgccgccttaccacgcgggtgccccgccgcctccaccacccggcccg
ccgccgccgcaccagccgcagttcaatttcggccccgggcccccgcagcagcccccgccc
ccgccgcagatgtactaccagcccccgccgccgccctacggcgggaccagcaacccgcca
ccgcctcccccttcggcgccacccccgcctccgtcccctccccctgcggccccgcccccg
ccccctccgcctccggcccagccgccgcctgcccaggccccgccggtccccaaggagcag
cagcctaaggccgcgctgccgaggaccgagacggaggaggagcgacgtgcgcggaagaag
cgtgagttcgagaagcagcgggtggaggaccggaagcaacagcagatgatgcgccagacg
caggcccacattctgcagaagacgcagcaggtgcgcacttcacagcagcagccgtcgtcg
cagagtcgccaccaccatccaccgggtggctctcgggcagcggcaactgggtctcgccca
gcatcagcgcctaatgctgagaggtttgagaaccggctcaaaaagccaacaacattcctg
tgcaagcacaagtttaggaatgaactcccagatccaagtgcccagctgaaatggctgccc
ctgaataaggataaggaccgatataccaaatacaggataacttcattggagaaaaattac
atgcctaaaatgattgtcccagaggatcttgggatacctctcgacctacttgacatgagt
gtatacaacccccctgctgttcagccacccatagctcctgaagacgaagagctactgaga
gatgatgaggtcctcacccctattaaacaagaaggtataaggaaaaaggagaggcccact
gacaaaggtgtttcttggctggtcaaaacacaatatatatctccattgagtactgatgca
gccaaaacgtcccttactgagaagcaagcgaaggaaaggcgggaatcaaggatgggtcgt
aatgctttcctggacagtcttaatgatagagagaaacagatcaaagccatcgaagaatcc
ttcagagcagccaaatcacggcctgttcaccagactaaacgtgggatgcaagctgagtgg
gttatgcctttgctacctgattttgataggtacgatgatccgtttgtcatggtgaatttt
gatggagacccaactgctgattctgagcagtacaacaagcttgaaagacccatacgtgat
gaatgtgaatcccgggctgtgatgaaaagttttagtgttaatggttcagaccctacaaaa
caagagaagtttttggcatacatggccccagcaccccatgagcttgctagagacttggat
gatgaagatgatatccagtattcttggctaagagagtatcactgggaagtaagaggagat
gataaagatgatccgacaacataccttgtcacatttgatgaggaggagggtgcaagatat
ttgcctcttcctactaaactagttttgcagaagaagaaagctaaggaggggaggtcgggg
gatgaaattgagcattttccagtgccttcccgaattaccgtgagcagaacagctcatggc
ggtaccatggagcgtggagagtcttcaggcatgcatgagaatttaaagcgccaaagatct
cctgttgatgatgatcttgatgagaaccaaaagcattctcggggagatgttgatcaatat
agtggagaagaatattctgagtga
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