Panicum virgatum (switchgrass): 120711519
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Entry
120711519 CDS
T07260
Name
(RefSeq) thyroid adenoma-associated protein homolog
KO
K24169
thyroid adenoma-associated protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
120711519
Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
Other domain-containing proteins
Armadillo repeat domain-containing proteins
120711519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF2428
TPR_Trm732_C
TPR_Trm732
Motif
Other DBs
NCBI-GeneID:
120711519
NCBI-ProteinID:
XP_039853011
LinkDB
All DBs
Position
6K:complement(7269564..7278250)
Genome browser
AA seq
2169 aa
AA seq
DB search
MSAKWRSLQHRHRYTYTSIVFPKHYHEALALVPADITSSDFFLQLNNLISLTSTYSQVVV
VKDLASAYVQFLSAPGTSDDAVLAATKLYLEILFLENSLPLHRTLISVLAKCKKFSPVIS
GCFALLCEEYGGSGSKTKKRFLVSRAALSLIGYPKLGFLDEAVERCAEIMALDIVDGLDG
VTRDIGEGSRPSPVVMEQCQEAMSCMYYLLQRYPSKFTGLDKASSVFNSSVRTILSVLKS
SAFSRDCLVASGVSFCAAVQVFMSAEEISWFISHGLFGVCADHEDRKDLSMHDVLSDFNL
CEEIRDLSILSRLCLLRGILTSIPRTVLNVRQLDSSGSLWTVLYDGILPELCKHCENPID
SHFNFHALTVTQICLQQIKTSVLTDSTDFSGDYKPFSRNVINRILRIIWRNLEDPLSQTV
KQVHLIFDLLLDIESCIPSEDRGLNNKLFLSNIANDLLRLGPRCKGRYVPLASLTKRLGA
KSLLSLKPNLLSETAYAYIDDDVCCAATTFLKSFLETLRDECWNDDGVDQGYDAFRVLCL
PPLMRGLVSGNSKLRSNLNTYALPALIEVDADSIFTMLGFISVGPSAKATELDVVLKNDQ
CIAALVSLLKVSRNLALVEGDIDLDPDKLSQPQKEDNRGTAVISVRGINVTLPINWFALA
LTHSDESLRIDAAESLFLNPKTSSLPSSLELSLLKEAVPLNMRCSSTAFQMKWTSLFRKF
FARVRTALDRQVKQGSWIPSSTSSIEGADSVDAPKVAVIQRAEDLFQFMKWLSSFLFNSC
YPSGPYERKTIAMELILTLLDVWPICHSEGKNNLYPYNDSIILPDSTISFVGSIIDSWDR
LRENSFRILLQFPTPLPGISSSLSINNVIRWAKTLVLSPRVRESDAGALTFRLIFRKYVL
ELGVILVFSKESDCLECYTQSTDGDTEVVISQNPVAQYISSLIQWLCTVVEEGEKDLSKA
CKKSFVHGVLLTLRYTFDELDWNSEVVQSCVSEMRCLIERLLQLIMRITSLALWVVSSDA
WYMPYDMDDVIDDGSFLSDIYEEDQPTTGAEKEEQNAKPGSNGKPADQVVMVGCWLAMKE
VSLLFGTIIRKIPLPGCSHSNSSQDGLLDSTEETSMSEEILDVEQLEKMGDHFLQVLLKM
KHNGAIDKTRAGLTALCNRLLCSNDSRLCQMTESWMVLLMDRTIAKGQTVDDLLRRSAGI
PAAFIALFLAEPEGTPKKLLPRALEWLIEFAKTSLAIFQKDSNQKSGITKDGLGELCESL
SGTAASAHSNGNLSKSRDEGVVPTVHVFNVLRAAFNDANLATDTSGFSAEATIVAIRAFS
SPYWEVRNAACLAYTALVRRMVGFLNVQKRESARRSLTGLEFFHRYPALHPFLSSELKTA
TELLADGVSNNLESHIVKAIHPSLCPILILLSRLKPSSISCGTDDSLDPFSLLPFIQRSA
TQSNYRVRVLASRALIGLVSNERLQQVVSDLLDNLASANREVVSHSVQSSDPPILVNMEN
GNLLQASRSFSFNSIHGLLLQLSSLLNNNFRGLTDSCKKDQIIGQLIDVLSRCSWLGSTK
LCSCPVVSTSYLRVLDLMLDIARTGNSRHIEVIQTLLLELSSQCLSSAILTRYAFHDPTR
IELQQQATESFFSCVGLSKRNDETSEEDVQFHILGEPTSIISVMPREEVSLPELHKEIMS
CLANPTYDVRITVLKRILQLTKSIRHGHSKSILHQRAGANLQPVLMERLFAEDHPKCLYY
NLKIIFLWNMESPFNKGEDSCTILSFWNRLVHLNNTMSHAKTREIILCCMGMCMKWFAEL
LRNALQMNGLKTSELSTLFVRINEGNILSDALLRVNFFVTLVKNQSAPSETVNARRAAAE
AIVASGLLEEANFVASSVSNSCFPSECDEGHIKEKCIEASVSEFMSLYACKIIDLWLICI
KLLEDEDTYLRQNLANNVQKIIANGSASSFCDDSTPLQVDRVIELSFDYLTSLFGHWLKY
IECLLRIVLDTGNTLNSHGDLVRQIFDKEIDNHHEEKLLICQICCFNIQKLLQSKCQMET
GGKIELFLQNWREIFLNQLTSLTSGYIEKEGKTDWIGGIGNHKDVFISVYADLLGLYVLA
PSGSLEQQDSPVTYLQEFSNLNGFITPFLKNPLISNLYVLVKLSHERFRCSDKQENQVAS
NFDPYFLIR
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaaagtggcggtcgctgcagcatcggcaccggtacacctatacctcgattgtg
ttccccaagcactaccatgaggcattagctcttgtaccggctgatataacttcatccgat
ttctttctgcaattgaacaacttgatctccttgacctccacctactctcaagtggttgtg
gtcaaagaccttgcctcagcatacgtgcagtttctgtctgctccagggacatcggatgat
gcagtgcttgccgccacaaaactttatctggaaatcctcttccttgagaactccctccct
ctccaccggacgctcatatcggtccttgccaagtgcaagaaattctctccagttatcagt
gggtgctttgccttgctctgtgaggagtatggtggctctggtagtaagacaaagaagaga
tttttggtgtcccgggcagccttgtcactgattgggtacccaaagttgggatttttggat
gaggctgttgagaggtgtgcagagatcatggcactggatattgttgatgggcttgatgga
gtgactagagacattggtgaagggtcacggccatctccagtcgtgatggagcaatgccag
gaggccatgtcttgcatgtactacttgctgcaacggtacccgtctaagtttactggcctt
gacaaagcgtcaagtgtattcaatagttctgttaggacaatactatctgttctcaagtca
tctgccttttcaagggattgcctggtggcctctggagtgagtttctgtgctgcagttcag
gttttcatgagcgcagaggagatttcctggtttatttctcacggtctatttggcgtatgt
gcagatcatgaagatagaaaagatctatccatgcatgatgtgctttctgactttaatctg
tgtgaagaaatcagagatctttccattttgagtagactttgtttgctaagagggattttg
acttctattccaaggacagtactcaacgtacgccaacttgattccagtggatctttatgg
actgtattgtatgatgggattttacctgagctttgcaagcattgtgagaaccctattgac
agccacttcaatttccatgctcttacagtgacacaaatatgtttgcagcagataaagact
tctgttttaactgattccactgacttctctggagactataaacctttctcaagaaatgtt
atcaaccgtatattgagaatcatatggcgcaacctggaagatcctttgagtcagacagta
aaacaggtgcatttgatctttgatctcctattggatattgaatcatgtattccatctgaa
gaccgtggactcaacaacaaattgttcctgagcaacattgcaaatgatttacttcgcttg
ggcccacgatgtaaagggagatatgtccctttggcttctttgacaaagcgattgggtgcc
aaatctcttctaagtttgaaaccaaacctgctttcagaaactgcttatgcatacatagat
gatgatgtttgttgtgctgcgacaacatttttaaaatccttcctggagactttaagagat
gaatgttggaatgatgatggtgtcgatcaagggtatgatgccttcagagttttgtgcttg
cctcctttgatgcggggacttgtatctggaaactcaaaactgcgttccaacttaaatact
tatgctttacctgctcttattgaagttgatgcagatagcatattcacaatgcttgggttc
atctcagttggcccgagtgcaaaagcaactgaactagatgttgttttgaaaaatgatcag
tgtatagctgcactggtttcactgctcaaagtctctcgaaacctagctcttgttgaaggg
gacattgatttggatcctgataaattgtcacagcctcagaaagaggataacagggggact
gcagttatatctgttagaggaattaatgttacactgcctattaattggtttgcattggca
ctgacacacagtgatgaaagtctccgtatagatgctgctgaatctctctttctaaatccg
aagacatcaagtcttccatcctccttggaactgagcttgcttaaagaggcagtcccattg
aatatgcgttgtagctcaacagcatttcaaatgaaatggacaagtttatttcggaagttt
tttgctagggtacgaacagcacttgacagacaggtaaaacagggatcatggattccatct
tcaacctctagtattgaaggagctgattctgttgatgctcctaaggttgctgttatccag
agggctgaagatctattccaattcatgaagtggctgagctcctttctgtttaattcttgt
tacccatctggcccttacgaaaggaaaacaattgcaatggagcttattcttacactatta
gatgtatggcctatttgccattctgaagggaagaacaatctttatccttacaatgacagc
ataatattgccagattcaacaatttcatttgtagggtctataattgatagctgggacagg
ctcagagaaaactcctttcgcattctgctgcagtttccaacaccactccctggaatttcc
tctagtttatccataaataatgttatcagatgggcaaaaacacttgtactaagcccacga
gtccgggaaagtgatgccggtgcgttaaccttccgtcttatatttaggaagtatgttttg
gagcttggagtcattcttgtgttttctaaagagagtgattgccttgaatgttacacacaa
tctacggacggagatacagaagttgttattagtcaaaacccagttgcacagtatatttct
tcactcattcaatggctctgtactgttgttgaagagggtgagaaggatctttccaaagca
tgcaagaaaagctttgttcatggagttctcctcaccctgcgttacacattcgatgagctg
gattggaactctgaggtagtgcaatcgtgtgtttctgaaatgaggtgcctgatagaaagg
cttcttcaactcataatgcgtataacttcgctggctctctgggtggtttcttctgatgca
tggtatatgccatacgatatggatgacgtgattgatgatggttccttcctctcagatata
tatgaggaggatcaacctactactggtgcagaaaaagaagagcagaatgcaaaaccaggg
agtaatggcaaaccagccgatcaggttgttatggttggttgttggcttgctatgaaggag
gttagcctactttttggaaccatcatcaggaaaattccgttgcctggctgctctcattca
aattcatctcaggatggcttacttgacagtactgaggagacaagcatgtcagaagaaatt
cttgatgtggagcagctagagaaaatgggtgaccattttttacaagttcttcttaaaatg
aagcataatggtgcaatagataagacaagggctgggcttactgccctttgcaatcgtctc
ctttgctcaaatgattcaaggctatgccaaatgacagaatcttggatggtgctactgatg
gataggacaatagccaaagggcaaactgtagatgatttgctaagaaggagtgcaggaata
cctgctgcgtttatcgctctgttccttgcagagccagaaggaacaccaaagaagctactt
ccaagggcactagaatggttgatagaatttgctaagacatctttagctatttttcagaaa
gatagcaaccagaagtctggaataacgaaagatggtcttggagagctatgtgaatcacta
tcaggaactgctgcaagtgctcattctaatgggaatctatctaaaagccgagatgagggc
gttgttcccacggtgcatgtgttcaatgtgcttagagctgcctttaatgatgcaaatttg
gcaaccgacacttcgggtttcagtgctgaggcaacaatagttgcaatccgggcattttca
tctccctactgggaagtgcgcaacgcagcttgccttgcatacactgcactggttcgtcgc
atggttgggtttctgaatgtgcagaaacgtgaatcagcacgacgatcattaactggcctt
gaattcttccacaggtacccagcacttcatcctttcctttctagtgaactaaaaactgca
actgaactgctagctgatggagtttctaacaatttggagtcacatattgtgaaagccata
caccctagcctttgtccaattcttattcttctatcaaggctgaagccatcgtctataagc
tgtggaactgacgattctttagaccctttttcgcttttgcctttcatccaaagaagcgct
acccagagtaactaccgggttcgtgtccttgcatcaagggcattaattggtttggtatct
aatgagaggctgcagcaagttgttagcgatctactggataatttggctagtgcaaatcgt
gaagtggtttcccacagtgttcagtcttctgaccctcccatattagttaatatggaaaat
ggaaatttacttcaggcttctaggtctttttcatttaattcaatccatggccttttgctg
cagctgtcttctcttctgaataacaactttagaggtctgacagacagttgcaagaaagat
cagattattggccaactaattgatgttctctcaagatgttcttggcttggcagcaccaaa
ttatgctcatgccctgttgtaagtacatcttacttgcgggtattggatctcatgcttgat
attgcaaggacagggaacagcagacatattgaagtcatccagacattactgttagagttg
agctcccagtgcttgagcagtgcaatattaacccggtatgcattccatgatccaacccgg
attgaacttcaacagcaagcaactgaatcatttttcagctgtgttggtctttctaaaaga
aatgatgaaacttctgaggaagatgttcagttccacatacttggtgaacccacttcaatc
atttcagtgatgcctagggaggaagtctccctacctgaactacacaaggagattatgtca
tgtcttgctaatccgacatatgatgttagaattacagtgctgaaaaggattcttcagctc
acaaaatcaatcagacatggccatagtaaaagcattttacaccaacgggcaggagctaat
ctgcagcctgtcttaatggaacggttatttgcggaagaccaccccaagtgcctttattat
aatctaaagatcatctttttgtggaacatggaatccccattcaacaaaggagaagattcc
tgcacaattttatccttctggaacagactagttcatttgaacaacaccatgtcacatgca
aaaaccagagaaataattctatgttgcatgggtatgtgcatgaaatggtttgctgaatta
ctcaggaatgctcttcaaatgaatggtcttaagactagtgagctctctacattatttgtc
agaatcaatgaagggaatatattgtctgatgccttgcttagagtaaacttctttgtcact
cttgtcaagaaccaaagtgcaccatcggaaactgtgaatgctcggcgtgctgctgctgag
gcaattgttgcttcgggtcttcttgaagaagcgaactttgttgcttcatctgtgtccaac
tcgtgcttcccttctgaatgtgatgaagggcatatcaaagagaaatgcattgaagctagt
gtttctgaatttatgagtctttatgcatgcaagattattgacttgtggttgatatgcatt
aagttgttggaggatgaagatacctatctgagacaaaaccttgcaaataatgtacagaaa
ataatcgcaaatggttcagctagttccttctgcgatgattccacaccactgcaagttgat
agagttattgaattgagctttgactatcttacttccttgtttggccactggctgaaatac
atcgagtgcttgttaaggatagtcttggatactggaaacactttgaactcccatggggat
ttggtccgtcagatatttgataaagaaatagataatcatcacgaggaaaagctgttgata
tgtcaaatctgctgttttaatatacagaagcttctgcagtccaaatgtcagatggaaaca
ggaggaaaaattgaattgttcctgcagaactggcgggagatctttttgaatcagctcaca
tcactgaccagtggctatattgagaaagaggggaaaactgattggattggcggcataggc
aaccataaggatgtgttcatatcagtttatgcagatctgttaggattatatgtgctcgca
ccatcaggttctctggagcaacaggacagtcctgtaacttatttgcaagaattttcaaac
cttaatgggtttatcacacccttcctcaagaaccctctgatatctaacctttatgtgctt
gtaaaactgtcacatgagaggttcagatgctcagataaacaagagaaccaagtggcctca
aattttgacccatattttcttatcagatga
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integrated database retrieval system
