KEGG   Panicum virgatum (switchgrass): 120711526
Entry
120711526         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120711526
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120711526
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120711526
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120711526
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 RNA_pol_Rpb2_2 DUF2969
Other DBs
NCBI-GeneID: 120711526
NCBI-ProteinID: XP_039853017
LinkDB
Position
6K:complement(7317615..7325363)
AA seq 1251 aa
MGKSQANGDPSPDVSDSDMMDFLNMDGDGEDDCDSPKKNSTIGERWPSVDVDVDQSVMDV
DFEGLLSVVDEGNGQSSAMDVELEGTLSVEDVDFTGTPVPVDFNVASLERFCKEASRSFF
SKNGLVSHQINSYNDFVSQGLQELIDSIGEITVEPDYDPSNKDGAWKYASVKFGKVTLEE
PVFMVENSDLAVQDLKLKPRHARLQKMTYSSRMNVEMAVQVYTLEKSDKAKTGKDMHVSR
RDIMKETKQVGIGMLPVMVKSKLCWLDKLEESECQFDSGGYFLIKGMEKVFIAEEQRCLS
RIWITDRPCLEASYMSVIKREKIYIKLVQSKRNESLKVINISFLGAIMPIWVMFFALGVS
SDKEAFDMIDILDCDASVINIISSTVKESHEECEGFRALGRACQYVDKLVKKTKFPPEEA
FDEYVCKYMFPGVNGIRCKAIFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLDLACQLLRR
ELWVHVMFAQRRMVKLMQKDLSSDGNLQDLRRYLDASIVTNGLNRAFSTGSWRHPYKSER
CSGVVATLRRANPLQMMSDLRKTRQWFAYSGTTGDARYPNPSYWGKLCFLSTPDGEKCGF
VKNLAVTAMVSSVVKEPPLIDTFVDCGMMKLDENITLQDISGKDRIFLNGNLIGVCADPG
KLISQFRSLRRNKKIEPQVEIKRDRHSKEVRVFSDPGRILRPLLVVENLRRIKRPKGGLY
SFQELMDQNIIELIGAEEEEDIQCAPGIRHLFTREKEEVSSDYTHCELDPSFLLGLSCSL
IPFANHNNAKRVLMQAEKLSQQAIGYSPLNSCSRFDSLSHQIFYPQRPLFKTVVADCIGK
ADYNFGRKDDFTPTEYFNGQNAIVSVNVHQGFNLEDSLVLNRASLERGMFRTLHFKSYKA
NVENKEITRRLKYKENLSFGKVQSKKGKVDSLDNEGLPYVGASLQSGDIVIGKVTESGED
FSVKLMHTEKGMVEKVVLSANDDGMNFATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQ
ENFPFTRQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGKVRYATPFTTPSVDVIT
EQLHKAGFSRWGGESVLNGHTGERMRSLVFIGPTFYQRLTHMSEDKVKFRNTGPVHPLTR
QPVEDKKRFGGVKFGEMERDCLLGHGAAASLHERLFVLSDFSQMHICQACERVANVIMRP
EPGGKKVHGPYCLFCQSAERIVRINVPYGAKLLYQELFSMGICLKFETEVR
NT seq 3756 nt   +upstreamnt  +downstreamnt
atggggaaatcgcaagcgaatggtgatccatcacctgatgtctcagattccgacatgatg
gatttccttaatatggatggcgatggagaagatgactgtgactcccccaaaaagaacagc
acaataggggagcggtggccttctgttgatgttgatgtagatcagtctgttatggacgta
gattttgaaggcctgttatctgtggtagatgaaggcaacgggcagtcgtctgctatggat
gtggaattggaaggaacactatctgtggaagatgtggattttacaggaacaccagtccct
gttgacttcaatgttgcaagcctggagaggttttgcaaagaagcatcaagatcgttcttc
agtaagaatggactagttagccatcagataaattcgtacaatgattttgtctctcaaggg
ctccaggagctcattgattctattggggaaattactgtagagcctgattatgacccttca
aataaagatggtgcttggaagtatgcgtccgtcaaatttggtaaagttacacttgaggag
ccagtgttcatggttgaaaacagtgatcttgctgtgcaagatctcaagttgaagcctaga
catgctcgcctccagaagatgacatattcgtccaggatgaatgtggaaatggctgttcag
gtttatacactcgaaaaaagtgacaaagccaaaactggtaaggatatgcatgtttctaga
agggatataatgaaagaaactaaacaggtcggcattggaatgttacctgtcatggtgaag
tcaaaattgtgctggctggataaacttgaggaaagtgaatgccagtttgattctggtggc
tactttttgatcaaagggatggaaaaggtattcattgctgaagagcagagatgtttatcc
aggatttggatcacggatcgtccctgcttggaagcaagttacatgagtgtgatcaaacga
gaaaagatctacataaaacttgtacaatctaaaaggaatgaaagcctcaaagtcatcaac
atttccttcctgggtgcaattatgccaatctgggtaatgttttttgcactaggtgtatcg
tcagataaggaagcttttgatatgattgatatattagactgtgatgcttctgttatcaac
ataatatcgtcaactgtgaaagaatctcatgaagaatgtgaaggcttccgcgctctaggt
agagcttgtcaatatgttgataagctggtaaaaaaaacgaagtttcctcctgaagaagcc
tttgatgagtatgtttgtaagtatatgtttcctggtgtcaatgggattaggtgcaaggca
attttcctgggttacatggtcaaatgcctgctaatggcttactctgggaatcgaaaatgt
gataataaggatgatttccgtaacaagaggctagatcttgcctgccaattgcttcggaga
gaactgtgggtgcatgttatgtttgcacaaagacgcatggttaagctcatgcaaaaagat
ttgagctctgatggaaacttacaagatcttaggcgttacttagatgcatcaattgttacc
aatggtttgaaccgggccttctccactggttcctggaggcatccttataaatcagaaagg
tgttcaggggttgtagcaacccttcggagagcaaatccacttcaaatgatgtctgacttg
aggaagactcgacagtggtttgcgtattctggaacaactggggatgcaagatacccgaat
ccatcctactggggaaaattgtgttttttgtccacccctgatggtgaaaaatgtggattc
gtgaaaaaccttgctgttacagctatggttagctctgtggtgaaggaaccgccgttgatt
gatacatttgttgattgtggaatgatgaaactggatgaaaacattactctacaagatatt
tctgggaaagacaggattttcttgaatgggaacctgattggagtgtgtgccgacccaggc
aaattgatttcacaatttagaagcttgaggcgtaacaagaaaattgagccacaggtggaa
atcaaaagggacaggcacagtaaagaagttcgtgtattttctgatccggggagaattcta
agaccacttcttgtagttgaaaatctaagaagaatcaaaagaccgaaaggtggattgtac
tcatttcaggaacttatggatcaaaacataattgaactaattggtgctgaagaagaggag
gatatccaatgtgctcctggaattaggcatctattcacaagggagaaagaagaggtgtct
tctgattatactcactgtgaacttgatccttctttcttgctagggttgagttgcagtctc
attccttttgccaaccataataatgctaagagggttctgatgcaagctgaaaaattatca
cagcaagctattggctactcccctttgaactcatgctctagatttgatagcctctcacat
caaattttctatccacagagacccttgtttaaaactgtggtggcagactgtattggaaaa
gcagactataactttggacgtaaagatgacttcactccaacagaatatttcaatggccaa
aatgcaatagtctctgtcaacgttcatcagggatttaacctagaagattctctagttctg
aatagggcctctctagagcgtggcatgtttcgtacactacatttcaagagctataaagcc
aatgttgaaaacaaagagatcactagacgactcaaatacaaggaaaatctcagttttggt
aaagtgcaaagcaagaaggggaaggttgacagtctggataatgagggtttaccatatgtt
ggagcaagtcttcaaagtggtgacattgttattgggaaggtcaccgaatctggcgaagat
tttagtgttaaactgatgcatactgagaaagggatggtagagaaggtagttctttctgca
aatgatgatgggatgaactttgcaactgttactctaagacagtctcgctcgccatgtgtc
ggagacaagtttgccagcatgcatgggcagaaaggagtggttggccttttggattctcag
gagaacttcccatttactcgccaagggatagttccggacatcgtcataaacccacacggc
tttccaactcgtcaaactcctggtcagttgcttgaagctgctttggggaaggggattgcc
ctgggtgggaaggtgagatacgcgacaccattcaccactccatctgtggatgtgatcact
gaacagttacacaaggctggtttttcaaggtggggtggggagagcgtcctgaatgggcac
actggtgagcggatgaggtcgctggtcttcatcggcccgaccttctaccagcggctgacc
cacatgtccgaggacaaggtgaagttccgcaacaccgggcccgtgcacccgctcacgcgg
cagccggtggaggacaagaagcggttcggtggcgtcaagttcggggagatggagcgagac
tgcctcctcggccatggcgctgctgccagcctccatgagcgcctgttcgtgctaagcgat
ttctcacagatgcacatctgccaggcctgcgagcgcgtggccaacgtgatcatgcgcccc
gaacctggtggcaagaaggtgcacggcccctactgcctcttctgccagtccgcagagcgg
atcgtccggatcaatgtgccttatggagccaagctgctgtaccaggagctcttcagcatg
ggcatctgcctcaaattcgagaccgaggtccgctag

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