Panicum virgatum (switchgrass): 120711625
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Entry
120711625 CDS
T07260
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120711625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120711625
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711625
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120711625
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120711625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
120711625
NCBI-ProteinID:
XP_039853147
LinkDB
All DBs
Position
6K:complement(9354172..9364791)
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AA seq
964 aa
AA seq
DB search
MAGPPAGGQVVERFRARLREEAGGEPGAAAVVRAYAEALRELTFNCKPVITELTIIAGQH
AALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGREYVDHFANRLQKVFVDAYCR
VDPSQYASMQRLFRTWWPVFPSSVLRGIEDDLQFSPSEDKRPAIATNPHQSESLSPRPSH
GIHVNPKYLEAQQKLKQTNVQVHQPVVRGMRQMADLDEDPMNGLTSNGLRGRPSSMLQKS
TVQYAGDSDQQDTFRSIAGIRATSPHLLSTHPSDVILDGPLATSRGNLSKSPPLDVFPRN
VSPKRSLERLPPSHSVLGPDPRRFPDRNGRSRWTYDDGAQRPTISMIDEEYRKQSARELI
DAYGNCQARDADERVFKMQRLDSNGMASKSSARNWLTSEEEEYSWEDMSPTLTDRVRSSM
PSFTPGAMRAGFPGANAGLLESDTGRHNFPRQSHQSSIDGPPLNLEDRITSSNHVDMSTS
RRYLSNYGVQNGAHLEYQTSEHTLNHGRTATMQTPPWQQPTGLPLRVQAPEHPSVLDRIP
LPADGAMPVKRLEIGGTYNALGVDIPLLEKRRPLTAPTPMEWPHHTQSQTLLPIPPDTKH
VRNAADSLEIRPFVSQGASSSVFVPRHHYDALDQKTLSTGSLAQPPYQHQDLLPSSQQNQ
GTILGNQAQPHHPQQFRPHPHPHPNPHHQEAFRSFAPGISVSQFSGQGGTAVMPPVSLLP
SSFSVSPAVPPYGMPSVPSFPRPPLPPGPPPASLQIGSSSSQVGGAQPFVSGLLSNLMRQ
GVITLETPGRPQDSIGVDFNVDLKVRNEPVINALYQDLSRQCKTCGLRFKCQEEHRAHMD
WHVTKNRNSKNRKQSSRKYFVTAEEWLRAAETVGNDGVPAFIPSEPVPDRKEEKEIAVPA
DEEQTACALCQEPFEDFYSDETEEWMYKGAIYMDAPDGNIDGLERSQLGPIVHAKCRSAP
SNTS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcggggccccccgcggggggccaggtcgtggagcggttccgcgcgcggctgcgcgag
gaggcgggcggcgagccgggcgccgccgcggtggtgcgcgcgtacgcggaggcgctccgg
gagctcaccttcaactgcaagccggtcatcaccgagctcaccatcatagcggggcagcac
gccgcgctcgccgccaggggcatcgccgacgccgtctgcgcccgcgtcgcggaggtgcca
cctgaccagatattaccatctttgtatctgctagatagtattgtgaagaacattggacgg
gaatatgtcgaccattttgctaataggttgcagaaggtatttgttgatgcatactgcaga
gttgatcccagtcagtatgcttcaatgcagcgcctctttcgtacatggtggccagtgttt
ccttcttctgtgcttcgtggcattgaggatgaccttcaattttctccctcagaggataag
cgtcctgccatagcgacaaatccgcatcaatcagagtcgctatctcctaggccatcacat
ggcatacatgtaaatcccaagtacctggaagcacaacaaaaattgaagcagaccaatgtg
caggtgcatcaaccagtagtccgtggcatgaggcaaatggctgatctggatgaggatccg
atgaatggattaacatctaatggtttgcgaggacgtccatcttcaatgcttcagaaatct
actgtgcagtatgctggtgattctgatcaacaagatacatttcgatctattgctggaata
agggcaacgtcaccacatctgttgagcacacatccatctgatgtcattctagatgggcca
ttagcgacttcaaggggaaacttgtccaagtctccacctcttgatgtgttccctaggaat
gtgtctcccaagagatcgctagagaggctgccaccatctcattctgtattgggacctgac
cccagaagatttcctgatcggaatggcaggtcgagatggacttatgacgatggtgcacag
cggccaacaatcagcatgattgatgaagaatacaggaagcaaagtgcaagagaacttatt
gatgcttatgggaattgtcaagcccgagatgctgatgaaagagtttttaaaatgcagcgc
ctggattcgaatggaatggctagcaaatctagtgcacgaaattggctcacttcagaggaa
gaagagtattcttgggaggatatgagtccaactttgactgatcgagtcagaagcagcatg
ccttcttttactcctggagccatgagagctggatttcctggggcaaatgcagggttactt
gaatctgatactgggaggcacaattttccaaggcaatctcatcaatcatcgattgatgga
ccaccattgaatctcgaagataggattacttcttcaaatcatgttgacatgtctactagt
aggagatatctaagcaattatggtgttcagaatggagctcatttggagtaccagacttct
gagcataccctcaatcacgggagaactgctaccatgcaaactccaccttggcaacagcct
actggtctgccattgcgagtgcaagcacctgaacatccatcagtacttgatagaatacca
ctgcctgctgatggtgcaatgccagttaagagattggagattggtggtacatacaatgct
ttaggtgtagatatacccttgctggagaagcgcaggccactaactgctcctactccgatg
gaatggcctcatcatactcagtcgcaaactttactaccgattccacccgatacaaaacat
gttagaaatgcagcagatagtttagaaattaggccatttgttagtcaaggagccagttca
tctgtatttgttccacggcatcattatgatgccttggatcagaaaacattaagtactggt
agcttagctcaaccaccataccagcaccaagatttgctgccatcgagtcaacaaaatcaa
ggtacaattttgggaaaccaagctcagcctcatcatcctcaacaattccgtccccatccc
catccccatcccaatcctcaccaccaggaggcttttagaagctttgcccctggcatatct
gtctcccagttctcagggcaaggaggtactgcagtgatgccaccagtttcacttctgccc
agttccttttctgtatcacctgctgtgccaccctatggcatgccgtctgtgcccagtttt
cctaggccaccattacctcccggaccaccacctgcttcactgcagattggttcatcatca
tcacaagttggcggcgctcaaccatttgtctccggactgttgagtaaccttatgcgccaa
ggtgtaattacattggaaacacctggccgacctcaggattcaattggagttgatttcaat
gtagacctcaaggtacggaacgagcctgtcatcaatgctttgtatcaggatctttcaagg
cagtgcaaaacttgtggccttcggttcaaatgccaagaggagcatcgtgctcacatggac
tggcatgttacaaaaaatagaaattcaaagaaccgtaagcaatcttcacgtaaatatttt
gtaacggcggaggaatggttaagagcagcagaaacagttggaaacgatggtgtccctgct
tttataccctcagagccagtcccagacagaaaggaagagaaagaaatcgctgttcctgcg
gatgaggagcaaacagcctgtgcattatgtcaagaaccatttgaagatttctacagtgac
gagactgaagagtggatgtacaaaggtgcaatttacatggatgcaccagatggtaatatc
gatggtctggaaaggtcacagttgggacctattgtccatgcgaaatgtcgatctgcgccc
agcaatacttcttag
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