Panicum virgatum (switchgrass): 120711643
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Entry
120711643 CDS
T07260
Name
(RefSeq) starch synthase 3, chloroplastic/amyloplastic-like isoform X1
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120711643
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120711643
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
120711643
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Storage polysaccharide
120711643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_5
CBM53
Glyco_transf_4
Glycos_transf_1
Glyco_trans_1_4
Glyco_trans_4_4
Ig_PIFI
Motif
Other DBs
NCBI-GeneID:
120711643
NCBI-ProteinID:
XP_039853174
LinkDB
All DBs
Position
6K:9755193..9771618
Genome browser
AA seq
1689 aa
AA seq
DB search
MQGPFGNISAHKQQWYSWHITPPYTVCTSHELGEQGDPQLHNKTLGPTRRHLQFSCKTAL
NRVRRWFWAMEMALLPQSPLCSRNQPTLMLQPTTLGGGPDQSFLRTSRFARSRIIRCRVA
SSDFPSRKSRKMVYPKVKVAAFRGYVPRLPAESSTKKSIHHNSDERTIGTFNRLLSTDTD
ESTSSRDLDTAEVDLLEDASSNLASGEVDVAEEGSLDMFEVDLSRNALINISLGVEEEEV
DEAAVEKDKFDIDSTRVQFGSAAVQELDPKDEAKAKEDIFVAGSSGITTNSDAMREMIDE
AKVEEDRVDVDLLGFGLNDEAGDIPEIFDVDVSGHASRSGKGYVGEPWVQEATSEMDILG
TASNSASLGKVNAVDDAKVEKYTFQVDDLSSASYSAIYMAVESSEEISEVDNDQWQHPAL
PSTSMEDKANNETHESLGPEPRTVVRVKEQDKLDFSVDEGSAFDTQEEDQQVVDYDWQEQ
NVTTFDEQEQDQCIIGCRRQDKSIVGVPEQNQSVVVYSKPDQSIVASHRKDESVAAVPEK
IQSVVGYKKPDQSIVASHKEDQSIVSVPEQIKSIVGYSKAEQSIIGLHKQQQSVVHIPQE
KQSIVGFHKQDLSTFSSSKESQTKKLDIPESRDALRTEEIEAKAGDYTPQKTDEDKLHAK
SDVDLLQKHKEDFTEEAPEMINSKKINEEHLAMVEEKKSISMGEEQWIVTDESISVVEVE
METGEDKSLHLPGEEDPWVEDEVGISEDEEHYEVEETFVSPEQDMQESPQDEMDPQELQR
MLRELAEKNYLLGNKFFVFPEVLKADSTIALYFNRDLSAIANEPDVLIKGAFNGWKWRFF
TEKLHKSELGGDWWSCKLYIPKQAYRFDFVFFNGRTMYENNGKNDFVIQIESTMDEHSFA
DFLVEAKQRELERFAIEETERKKQTEEEKRMKEERAAHEAAMAQAKAEIVTKKNKLQNVL
DSAKGSVDNLWYIEPISTVQEATVRVYYNRHSRPLIHSAEIWMHGGYNNWIDGLSFAERL
VHHDDKDGDWWYADVVLPQRAYVLDWVFADGPPGNARIYDNNGRQDFHSILPSNMTEEEY
WAEEEQRIYTRLQQERREREEAIRMKAERRAKLKAEMKEKTMRMFLVSQKHIVYTEPLEI
RAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWMHPGGVLPPQKMVKAEHGSHLKAIVNVP
QDAYIMDFVFSESEEGGIFDNRNGLDYHIPVFGSIAKEPPMHIVHIAVEMAPIAKVGGLG
DVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHIHQSFSWGGSEIKVWRGHVEDLCV
YFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFLLQSGSSPNIIHCHDWSSAPTAWLYK
ENYAQSSLANARVIFTIHNLEFGPHYIGKAMKYCDKATTVSNTYSREVSGHGDIAPHLGK
FYGILNGIDPDIWDPYSDSFIPVHYTPENVVKGKAAAKRALQQKLGLQQNDVPIVGIISR
LTAQKGIHLIKHAMRRTLERNGQVVLLGSAPDPRIQGDFANLANTLQGENHGRVKMCLTY
DEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGAIPIVRKTGGLYDTVFDVDNDKERA
RARGLEPNGFSFDGADNNGVDYALNRAISAWFDARGWFHSLCKRVMEQDWSWNRPALDYI
ELYRSASKL
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaccatttgggaacatatcggcccacaagcaacaatggtactcatggcacatc
accccaccttatacggtgtgcacgtctcatgaactaggcgagcaaggtgacccacagctg
cacaacaaaaccttgggacccacaagacgacacctccagttttcatgcaagaccgcactc
aacagggttaggaggtggttttgggcaatggagatggctctcctaccccagagccctctc
tgttctcggaaccaaccaacgctcatgctccagccaaccaccttgggcggaggccccgat
cagtctttcttgaggactagcagatttgccagaagcaggattattcgatgcagagtagca
agttcagattttcctagtaggaaatcaaggaagatggtgtatcctaaggtaaaagtcgct
gcttttagaggttatgttccaagactccctgctgagtcgagcaccaagaagagtatacac
cataatagcgatgaacgaactattggcacattcaataggctgttaagtactgatacagat
gagtcgacaagtagtagagatttagacactgctgaagtggatttgctggaagatgcttca
agcaatttagcttctggggaagtggatgtggcagaagaaggttcacttgacatgtttgag
gtggatttatcaagaaatgcattgattaacatatcgttaggggtagaagaagaagaagta
gatgaagctgcagtcgaaaaagataaatttgacatagactccacaagagtacaatttggc
agtgctgcagttcaggaattggatccaaaggatgaagctaaggctaaagaagacatattt
gtggctggttcttcaggaattacaacaaacagtgatgctatgagggaaatgatagatgaa
gctaaggtggaagaggacagggttgatgttgatttgttgggatttggtctgaacgatgaa
gctggggatataccggagatatttgatgtggatgtatctggccatgcttcgagaagtgga
aaagggtatgtgggtgaaccgtgggtccaagaagccacatctgagatggatattttagga
actgcttcaaacagtgcaagcctgggcaaagtgaatgcggtggatgatgctaaggttgaa
aaatacacatttcaggtggatgatttaagcagtgcttcttatagtgcaatatatatggca
gtggagtcttcggaagaaatctctgaggtagataatgatcaatggcaacatccagcacta
ccgtcaacatccatggaggacaaggccaataatgaaacacatgaaagtttggggcctgaa
cccaggacagttgtcagggtcaaggaacaggacaaattagatttcagtgttgatgaggga
tcagcttttgatacccaggaagaagaccagcaagtggtagattatgattggcaagagcaa
aatgttaccacttttgatgaacaagaacaagatcagtgtattattggttgtcgtagacaa
gacaagtcaattgttggtgtgcctgagcaaaaccaatccgttgttgtttacagtaaacca
gaccaatctattgttgcttctcatagaaaagatgaatcagttgctgctgtgcccgagaaa
atacaatctgttgttggttataagaaaccagatcaatctattgttgcttctcataaagaa
gatcaatcaattgttagtgtgcctgaacaaatcaaatctattgttggttacagtaaagca
gaacaatctattattggtttgcacaaacaacaacaatcagttgttcatatccctcaagaa
aaacaatccatagttggctttcataaacaagatctatcaactttcagcagctccaaagag
tctcaaacaaagaaacttgatattcctgagagtcgtgatgcacttcgtacagaggaaata
gaagctaaggctggagattacacacctcaaaagactgacgaggacaagcttcatgcaaag
tctgatgttgatttgttacagaaacataaggaagatttcactgaagaagcaccagagatg
ataaatagcaagaaaatcaatgaggaacaccttgcaatggttgaagagaagaaaagtatt
agcatgggggaagaacaatggattgttactgatgaaagcatttcagtggttgaggtggag
atggaaacgggtgaggacaaatctctgcatcttcctggagaagaggatccatgggttgaa
gatgaagtagggatatctgaggatgaagaacactatgaagttgaggagacgtttgtgtct
cctgaacaagatatgcaagaatcaccacaggatgaaatggatccacaagaactacaaagg
atgcttcgagaacttgctgaaaaaaattatttactaggaaacaagttttttgtttttcca
gaggttttgaaagccgattcaactattgctctgtatttcaatcgtgatctatcggctata
gccaatgagcctgatgtactcatcaaaggagcattcaatgggtggaagtggaggtttttc
actgaaaaattgcacaagagtgaattgggaggggactggtggtcctgcaaactatatatt
cccaagcaggcatacagatttgattttgtgttctttaatggtcgaactatgtatgaaaat
aatggcaagaatgatttcgtgatacaaatagaaagcaccatggatgaacattcgtttgcg
gatttcttggttgaagcaaagcaaagagaacttgagagatttgccattgaagaaactgaa
aggaagaaacagactgaagaggagaagcggatgaaggaagaaagggcagcacatgaagct
gccatggcacaagcgaaggctgagatagtgacaaagaagaataaattgcagaatgtattg
gattcagccaaaggatctgttgataatttgtggtacatagaacctatcagtactgtgcaa
gaggctactgtcagagtctattacaacagacactcgagaccccttattcatagtgctgag
atttggatgcacgggggctacaacaattggattgatggactctcttttgctgaaagactt
gttcatcatgatgacaaagatggtgattggtggtatgcagatgttgtcttacctcaaaga
gcatacgtgttggactgggtgtttgctgatgggccaccagggaatgcaaggatttatgat
aacaatggcagacaggattttcattctatcctgcccagtaacatgactgaggaagaatat
tgggcggaagaagaacagaggatctatacaaggcttcaacaagagaggagagaaagggag
gaggctattagaatgaaggctgagagaagggcaaaattgaaagctgagatgaaagaaaag
accatgagaatgtttctggtttctcaaaaacacatagtttataccgaaccacttgaaata
cgtgctggaaccacagttgacgttctttacaatccttctaatacagtgctaaatggaaag
ccagaggtttggtttcgatgttcttttaaccgttggatgcatccaggtggtgtgttgcca
ccccagaagatggtaaaagcagaacatggttcgcacttaaaagcaatagttaacgttccg
caggacgcctatataatggactttgttttctcggagtcagaagaaggtggaatttttgac
aacaggaatgggttggactatcatattcctgtatttggttcaattgcaaaggaacctcct
atgcatattgtccacattgctgttgagatggctcccatagcaaaggttggaggtcttggt
gatgttgttacgagtctttcacgtgctgttcaagatttaggacacaatgtcgaggttatt
cttccgaagcatgattgcttgaatctaagcaatgtgaagaatttgcatattcatcaaagt
ttttcttggggtggttctgaaataaaagtatggcgtggacatgtcgaagacctctgtgtt
tacttcttggaacctcaaaatgggatgtttggagttggatgtgtatatggaaggaatgac
gaccgtcgatttggcttcttctgtcattctgctctagagtttctcctccagagtggatct
tcaccgaatataatacactgccatgattggtcaagtgctcctactgcctggctatacaag
gaaaactatgcgcaatccagtttggcaaatgcacgggtcatatttactatccataatctt
gaatttggaccacattatattggcaaagcaatgaaatattgtgataaggccacaactgtc
tctaatacatattcaagggaagtgtcaggccatggcgacattgctcctcatcttggaaaa
ttctacggcattctcaacggaattgatccagatatttgggatccatacagtgacagcttt
atcccggtccattacactcctgagaatgtcgtcaaaggcaaggctgctgcaaagagggca
ttgcaacagaaacttgggttacagcaaaatgatgtgcccattgttggaatcatcagtcgc
ctgacagcacagaagggaatccacctcatcaagcatgcgatgcgtcgaacactcgaacgg
aatggacaggtggttctgcttggttctgccccagaccctcgaatccaaggtgattttgcc
aacttggcaaatactcttcagggtgaaaaccatggtcgagtgaagatgtgtttgacctac
gatgaacctctttcacatctgatatacgctggctctgacttcattctggttccatccata
tttgagccttgtggcttaactcagttggtcgccatgcggtatggagccatccctattgtc
cggaaaactggagggctctacgacactgtctttgacgtggacaatgacaaggaacgggcc
cgggctcgaggcctcgagccaaacgggttcagctttgatggagctgacaacaatggtgtc
gactatgctctgaatagggcgatctctgcttggttcgatgcccggggctggttccactcc
ctctgcaagagggtcatggagcaggactggtcatggaaccggcctgccctggactacatc
gagctctaccgatcggcttccaaactgtga
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