Panicum virgatum (switchgrass): 120711715
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Entry
120711715 CDS
T07260
Name
(RefSeq) KH domain-containing protein At4g18375-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711715
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120711715
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
KH_5
Motif
Other DBs
NCBI-GeneID:
120711715
NCBI-ProteinID:
XP_039853269
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Position
6K:10800102..10809691
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AA seq
634 aa
AA seq
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MRQQTGKRPRQHREYEREERKDQNKRPFAHAQESYNNDGLVVYRILCPDSVIGSVIGKNG
NVINAIRQQANAKVKVVDPYPGADKRVILVYCYVKHRDLDADEGDDNEPVCPAQDALLRV
HNAIVDALDTLHKNRRDSEKKKIEANILVPASQAASVIGKSGVVIKYLRSTSKAFIKVSP
KDPSDVTHSCAMSFDNFVQITGGAEAVKKALYGVSTILYKYPSKENIPLETSVPEPTPSI
IVPSELPVYPASNFYSAPDAAIPSGHPSLSILGSTPHVPELLSADGHGRLPIYQSVLPII
PAYSTPKCSGELEFRVLCPGNKIGLVIGRAGSTIKGIRQGSGARIDVDDAKNDKEESIIT
ITSTETTDDVKSAAVEAVLLLQAKINDYEEDRMNLRLLVPTKVIGCLIGRGGSIVNDMRK
KTKADIRISKGDKPRRASSSDELVEVSGEADKLRDALVQIVLRLREDVLKESVDRQNSDR
DGKLSIATTDSLYGSSLPLPALLPHSHSQQIAPLSYDRRGETERGLEVFPRTSSYGYSSL
QVADDDGYGGLSSYASKSYEGHVPRVEMTIPASALSKVMGKRGTNLENIRKISGAHVEII
ESKSSRHDHVAYISGTSEERQSAENLIKAFIMST
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagcagactggtaaacgtccccgccaacatagggaatatgaaagagaagaaagg
aaggaccaaaacaagaggccatttgcccatgctcaggaaagctataataatgatgggctg
gttgtttaccgtatactttgtccagacagtgtaattggtagtgtcataggaaagaatggc
aatgtgataaatgctatcaggcaacaagcaaatgccaaagtcaaggttgttgacccctac
cctggtgcagacaaaagggtcatcttggtatattgctatgtcaagcatagagaccttgat
gctgatgagggtgatgacaatgaacctgtttgcccagctcaagatgcattacttagggtg
cataatgcaattgttgatgcactagatacgctacataagaatcgtagagactctgaaaag
aagaaaatagaagctaacatccttgtaccagctagtcaggctgcaagtgttataggaaaa
tctggtgttgtcatcaagtatctccggtcaacatctaaagcattcattaaagtgagccca
aaagatccaagcgacgttactcattcatgtgctatgagttttgataattttgttcagata
actggtggtgctgaagctgttaaaaaggcactgtatggagtatcaaccatcctctacaag
tatccatcaaaagagaacattcctcttgaaacctctgttcctgaacctactccgagcatt
atagtcccttctgaacttcctgtctatccagctagtaacttttactcagccccagatgct
gctataccttctggacatccaagcctgtctatcttagggtcaacacctcatgttcctgaa
cttctatctgctgatggtcacggtcgactgcctatttatcaatctgtacttccaattatt
ccagcatatagtaccccaaaatgttcaggtgaacttgagtttcgtgttttgtgccctggt
aataagattgggctggttattggtagagctgggtctactataaagggtataaggcaaggg
agtggtgcaaggatagatgttgatgacgcgaagaatgacaaggaggaaagtataatcacc
attacatccactgagaccaccgatgatgttaagtctgcagctgtggaagctgttttactg
cttcaagcaaagatcaacgattatgaggaagatagaatgaatctacgccttcttgtccca
actaaggttatcggctgtcttattggcaggggtggttctatagtcaatgacatgaggaag
aagactaaggcagacatccgcatttcaaagggcgataagccccggagagcatcttccagc
gatgagcttgttgaggtatctggagaggctgacaagctgcgtgatgctcttgttcagata
gtattaagacttagggaagatgttctgaaagagagtgtggacagacagaattctgacagg
gatggcaagttatccattgccaccactgattccttatatggaagcagtcttcctttgcct
gcattattacctcactctcacagccaacaaatcgctcccttgagctatgatcgaaggggt
gaaactgagcgtggtctggaagtattccctcgtactagttcgtatgggtatagctccttg
caggtcgcagatgatgatggctatggaggactttcatcatatgcatcaaagtcatatgaa
gggcatgtaccgcgggtggaaatgactatccctgctagtgccctgtcaaaagtaatgggg
aaacgtggcacaaacttggaaaacattagaaagatttctggagctcacgttgaaattatt
gaatcaaaatcatctcgtcatgaccatgttgcttacatatctggcacatctgaggagagg
caatcagcagagaatctgatcaaagctttcataatgtctacctag
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