Panicum virgatum (switchgrass): 120711782
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Entry
120711782 CDS
T07260
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120711782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120711782
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711782
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120711782
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120711782
U7-dependent histone pre-mRNA processing factors
120711782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
120711782
NCBI-ProteinID:
XP_039853356
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All DBs
Position
6K:complement(12403065..12406236)
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AA seq
695 aa
AA seq
DB search
MASVAAPSGSLAGKRRASGAREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPA
YSGMAALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTAFKGRVFMTHATKAIFQLL
LEDYVKVSKVSVEDMLYNENDIARSMGKIELIDFHQTLEVNGIRFWCYTAGHVLGAAMFM
VDIAGVRILYTGDYSREEDRHLRAAELPQFSPDVCIIESTYGIQQHQPRIVREKRFTEVI
HNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYM
NSMNERIRNQFAQSNPFVFKHIESLNSIENFHDVGPSVVMASPGGLQSGLSRQLFDKWCT
DKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSNFL
DELRPPNIILVHGEANEMSRLKQKLISQFDGTNTKIVSPKNCQSVEMYFTCEKTAKTTGR
LAENVPEDGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIVVPYSGSFEVIKYR
LKQIYESVEPATEESDVPTLIVHERVTVRLESESFVTLQWSSDPISDMVSDSVVAVVLNI
VREGPKVVPVEEAAKTKEDAERVALKVVYSLMASLFGDVKVGEEGKFIISVDGDVAHLDG
TSGDVECENATLKGRIKTAFCRIQGAVTPIPLLAS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtcgccgcgccgagcggctcgctagcgggaaagcgccgggcctccggcgcg
cgggagggcgaccagatggtcatcacgccgctgggcgccggcagcgaggtcggccgctcc
tgcgtccacatgaccttcaagggccgcaccgtcctcttcgactgcggcatccacccggcc
tactccggcatggcggcgctgccctacttcgacgagatcgatccgtccaccgtagacgtc
ctcctcatcacccactttcacttggaccacgccgcctcactgccctatttcctggagaag
actgcgttcaagggcagggtgtttatgacccatgccacaaaggctattttccagctgctg
cttgaggattatgtcaaagtcagcaaagtttccgtggaggatatgctgtataatgagaat
gacattgctcgctctatggggaaaattgagcttatcgattttcaccagacgttggaagtt
aatggcatacgtttctggtgctacactgctggccatgtacttggtgctgccatgttcatg
gtggatatcgctggtgtgcgcattctttacactggtgactactcccgtgaagaagaccgc
cacctacgagctgctgagctcccacagttctccccagatgtttgcattattgagtcaact
tatggcatacaacaacatcagcccaggattgtacgcgagaagcgctttactgaggtcatc
cacaatactgtttcacaggggggtcgtgttcttatcccagcatttgctcttggcagagca
caagaactgttgcttatccttgatgagtattggtccaagcacccagagctccataagatt
ccaatctattatgcctcccctcttgcaaagaggtgcatggctgtctaccagacatacatg
aactccatgaatgaaaggatacggaaccagtttgcgcaatccaatccctttgttttcaag
catattgagtccttgaatagcattgagaactttcatgatgtaggtccttcagtggtgatg
gctagcccaggtggtcttcagagcggtctctctaggcagctttttgataagtggtgcacg
gataagaagaatgcttgtgttattccaggctatgttgtggaggggacccttgcaaagacc
attatcaacgagccaagagaagtgacgctagctaatgggctcactgctcctcttcatatg
caggttcactatatctctttttcagctcatgccgatttccctcagacaagcaactttttg
gatgaacttcggccacccaacattattcttgtacatggagaagcaaatgaaatgtcaagg
cttaaacagaaacttatttctcagtttgatggaacaaacaccaaaattgtttctcccaag
aactgccaatcagtggagatgtatttcacttgtgagaaaacggccaagactactggcagg
ctggcagagaacgtgccagaagatggagagtcgtcaggtggcttactagtgaaaaaagga
ttcacatatcagattatggctcctgaagatctccgagtgttcacacagttatctacagct
aacatcactcaacgcattgtggtcccttattctggttcttttgaagtcataaagtacagg
ctgaagcaaatatacgaaagcgtggagccagcaactgaagaatctgatgttcccacactt
attgtgcatgaacgagtgacagttcgcctagagtcagaaagctttgttacactgcaatgg
tcatcggatcccattagcgacatggtgtctgattctgtggtggctgtggtcttgaacata
gtccgtgagggtccaaaagttgttccggttgaagaagcagcaaagaccaaggaagatgca
gaaagggtagcactaaaggtagtgtattctcttatggcgtctctttttggtgatgttaaa
gtaggagaggaagggaaatttatcatatccgtcgatggagatgtggcacacttggatggg
acgagtggtgatgttgaatgtgaaaatgctacactgaaaggacggatcaagactgctttc
tgccgcatacagggtgctgtgacaccaattccacttttagcctcttga
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