Panicum virgatum (switchgrass): 120711885
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Entry
120711885 CDS
T07260
Name
(RefSeq) afadin- and alpha-actinin-binding protein-like isoform X1
KO
K06085
synovial sarcoma, X breakpoint 2 interacting protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120711885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120711885
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Centriolar satellite
120711885
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ADIP
Nucleoprot-TPR
GIT_CC
Motif
Other DBs
NCBI-GeneID:
120711885
NCBI-ProteinID:
XP_039853487
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All DBs
Position
6K:complement(15971276..15977923)
Genome browser
AA seq
388 aa
AA seq
DB search
MSSSARFDLRASSQQLQAPASHAGMSDGGAFANAGNLEHCARYLNQTLVTFGFPASLDLF
ATDPVSIARTCNCIYALLQQRQRDIEFRESTNDLRQRMQSDTSRLEAKIERMDAQLAAKD
RELATLTRTEAKNTAALKSQIDKLQQERDEFQKMVIGNQQVRTQQIHEMKKKEKEYIKLQ
EKLNQVLMEKKKESSRSGIEIMNLLQKEGRQRGTWSGKKNDNDYYKMIVDAYEVKKQELM
QENSDLRALLRSMQMDMREFLNAPNGSSQPTVAANGRKEAGSQSPLGGKTDVFDLPFHMA
RDQIEESLRTKMASIKARMTQLQDAQKGAEVTSEATERELELEAQLVEARSIIQEQASIM
SKHFTKSDKPSGRRHSGLDGEREASAEV
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgtcggcgcgcttcgacctccgggcctcgtcgcagcagctgcaggctccggcg
tcgcacgccggcatgagcgacgggggcgcgttcgcgaatgcggggaacctggagcactgc
gcccggtacctcaaccagacgctcgtcaccttcggattcccggcctcgctcgacctcttc
gccaccgatccggtctcgattgcaagaacgtgcaactgcatctatgcattgctgcagcag
cgccagagggacattgagttcagggagtctacaaatgatctgcggcagcgtatgcagtct
gatacttcacggctggaagccaagattgaaagaatggatgctcaattagcagccaaagat
cgggagctagccacacttactcgaacggaggcgaaaaacactgcagctttgaaatctcag
attgataagctgcagcaagaacgtgatgaatttcagaaaatggttataggaaatcagcaa
gtacgcactcagcaaatccatgaaatgaagaagaaagagaaggaatacataaaattgcag
gagaagctaaaccaggtattaatggagaagaaaaaggagtcatcccgttctggaatcgaa
ataatgaacttattgcagaaagaaggacggcaacgtggaacttggagtggaaaaaagaat
gacaatgattattacaaaatgattgttgatgcatatgaagtgaaaaagcaagaactgatg
caggagaattctgatttacgggcactcttgcgttcaatgcagatggacatgcgtgagttc
ctcaatgctccgaatggatcatcacagcctactgttgctgctaatggaagaaaagaggca
gggtctcagtccccactaggtggcaagacggatgtctttgacctgccctttcacatggca
agagaccagatagaagagagtttgcgcacaaaaatggcttcaatcaaggcacgaatgacc
caacttcaagatgctcaaaaaggtgctgaagtgacctctgaggctaccgagcgtgagctt
gagctcgaagctcagctggttgaagcaaggagcatcattcaagagcaggcctccatcatg
tccaagcacttcaccaagtctgataagccaagcggcaggaggcatagtggtctggatggc
gagcgagaggcgtctgctgaggtgtga
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