Panicum virgatum (switchgrass): 120711930
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Entry
120711930 CDS
T07260
Name
(RefSeq) preprotein translocase subunit SECY, chloroplastic-like
KO
K10956
protein transport protein SEC61 subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03060
Protein export
pvir04141
Protein processing in endoplasmic reticulum
pvir04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
120711930
04141 Protein processing in endoplasmic reticulum
120711930
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120711930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120711930
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pvir02044
]
120711930
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
SEC61 complex
120711930
Secretion system [BR:
pvir02044
]
Sec (secretion) system
Eukaryotic Sec-SRP protein
120711930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecY
TssN
Motif
Other DBs
NCBI-GeneID:
120711930
NCBI-ProteinID:
XP_039853541
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All DBs
Position
6K:complement(17387744..17395714)
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AA seq
558 aa
AA seq
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MATATATPPQCWRGLPASARARPPLLSPLRVHPLAAPFRPPRPRPASTAASGRGRRAALA
CSPRCTLETAGPAGFDPLGLYKEGPSGSDASSRSPLSTFFGILAPVFGSSSGGGARRDKA
SYGRGAAAAIEDSSIDIGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFAGNLD
QNSLLGTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQLYPKLQDLQRKEGEAGRKK
VLQYTRYASVGFAIVQAIGQVLYLRPYVIDFSTEWVLTSVTLLTLGSVFTTFIGERISDL
KLGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYVGLITIILSFFLLVLGIVYVQEAER
KIPLNYASRYSSRTGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLEFLKKA
AVALNPGGSLYLPTNVLLIAFFNYYYTFLQLDPDDLSEQLKRQGASIPLVRPGKSTAAYI
KTVLSRISVLGSAFLAVLAAGPSVVEQISHLTAFRGFAGTSVLILVGCATDTARKVQAEI
ISQKYKNIEFYDVNRFDQ
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccacggcgaccccgccgcaatgctggcgagggctccccgcttctgcgcgc
gcacgcccgcctctcctctcccccctccgcgttcaccccctcgccgctcccttccgtccc
ccgaggccccgccccgccagcactgcagccagcggaagaggaaggcgagccgccctggcc
tgctccccgaggtgtacgctggagacggccggcccggctgggttcgatcctctggggctc
tacaaggagggcccgtcggggtcggatgcttcttcgcggtcgcccctgtcgaccttcttc
ggtatcctggcgccggtgttcgggagctccagcgggggtggcgccaggagggacaaggcg
tcctatggccgaggagcagcagctgcaatcgaggatagctccattgacattggtgacttc
ttcaagggccctctgcctgggaagttcctgaagctccttggttttttggccttgtctcga
cttggtgtgtacatacccctgggtggggtaaaccgagaagcctttgctgggaaccttgac
caaaacagcctgctgggcactttagattctttctccggtggtggtataggtcgtcttgga
atatgctcccttggcattgtaccattcattaatgcacagattgtgtttcaactccttgca
caactgtacccaaaattgcaagaccttcagcggaaagaaggggaagcaggaagaaagaag
gttcttcaatatacaagatatgcctctgttggttttgcaattgtccaggctattggacaa
gtcctttatctccgtccttatgtgattgacttcagcacagaatgggttctaacctcggtg
acattattgacacttggttcagtctttactactttcattggtgaaagaatatctgatctg
aaacttggaaacggaacatctcttcttatatttacaagtattatatcgtacttgcctgca
tcatttgggaggacagttgcacaggcatttcaagatgggaactatgttggacttatcaca
atcatattgtcgttctttttgttagtccttggaattgtctatgtccaagaagctgaacgc
aaaatacccctgaactatgcttctagatacagcagtcgaactgggggacttcaacgatct
gcatatctaccatttaaggtcaacagttctggtgtcatgcctatcatattttcaacatct
tcgctggctttgcctggtactttggcacggttcactggcttggagtttcttaagaaggct
gccgtagcccttaatccaggaggttctctgtatcttccaaccaatgtattacttatagcc
ttttttaattactattacacatttctccaattggatcctgatgatcttagtgagcaattg
aagcggcaaggtgcttcaattcctcttgtgagaccagggaaaagcacagctgcttatatt
aaaacagttctcagtcgtatatctgtcctgggatctgcgtttcttgctgtgctagctgct
ggaccttctgtggttgaacaaataagtcacttgacggcattccggggatttgctggtaca
tcggtgcttatccttgttggatgtgcaactgacacagctcggaaagttcaagcagaaata
atttcccagaaatataagaatatcgagttctatgatgttaaccgttttgaccaatag
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