Panicum virgatum (switchgrass): 120711933
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Entry
120711933 CDS
T07260
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120711933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711933
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120711933
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
120711933
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120711933
NCBI-ProteinID:
XP_039853543
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All DBs
Position
6K:complement(17435060..17462216)
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AA seq
285 aa
AA seq
DB search
MVGLSEGEKHFIRGGIAQDIRTDGHRRLQFRALSVETGVIPQANGSARVRLGATEIIASV
KAELGKPNILHPDKGKVSIFVDCSPTAEPTFEGRRSEELSTELSVALQRCLLGGKSGAGA
AIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKDNVSLSAASD
EEPEVDVSNEEFLQFDTSSVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSVNRSGRVC
GLTKRGGVGLDPSVIFDMISVAKHVSQQFMAQLDSKISAAEADAE
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggtggggctatctgaaggggagaagcacttcatccgcggcggcattgcgcaggacatt
cgcaccgatggccataggcggctgcagttccgggcactctctgttgagactggagtcatc
ccacaggcaaatggttcagcgcgtgtcagattgggtgccacagagatcatcgctagtgtc
aaggctgaattggggaaaccaaacattcttcaccctgacaaaggaaaagtttctattttt
gtggactgtagtccaactgctgagcctacatttgagggtagacgttcagaagaattgtct
actgagttgtctgttgccctgcaaagatgcctgctaggtggtaaaagtggtgcaggtgct
gcaattgatctgtcatccctaattgttgttgagggaaaggtatgctgggatctgtacatt
gatggacttgtggtcagttctgatggtaacctactagatgcgttagctgctgcaataaag
gttgctttgagtgatacaggtataccaaaagataatgtttctcttagtgctgcatctgat
gaggaacctgaggttgatgtaagcaatgaggaatttctacagttcgacacctccagtgtg
cctgttatcgttacattaaccaaggtgggtcggcactacattgttgatgctacctcagag
gaagaatcccagatgagttctgcagtgtcggtatcagtcaataggagtggtcgagtatgc
gggctaaccaagaggggtggtgtaggcctggatccaagcgtcatcttcgatatgatatca
gtggccaagcatgtgagccagcagttcatggctcaattggactcaaagatatctgctgct
gaagctgatgctgagtga
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