Panicum virgatum (switchgrass): 120712029
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Entry
120712029 CDS
T07260
Name
(RefSeq) WD repeat-containing protein 76-like
KO
K24755
WD repeat-containing protein 76
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120712029
03036 Chromosome and associated proteins [BR:
pvir03036
]
120712029
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120712029
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120712029
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120712029
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
120712029
DSBR (double strand breaks repair)
Other DSBR factors
Others
120712029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
PH_SPO71
Beta-prop_IFT122_1st
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
120712029
NCBI-ProteinID:
XP_039853651
LinkDB
All DBs
Position
6K:complement(20248136..20251587)
Genome browser
AA seq
461 aa
AA seq
DB search
MAEAGLTDYERRREENIRRNETILASLRRQVAELSASVRPSPSLKRPKKEQPRARPAGPV
VLRRSPRTRGIAPGEPSASTGANTSPAAPPSPTKPRTTRFSSSLASALRDATAVKPPPRP
EGGICAADGFDAGRELVLRSANVRRVVPERILSVRILPLADRTVVAAGNKLGHIGLWDVD
GLVEDEEDGDGANGVFQYFPHRGSVGGIVMHPDAQRKIYSCSYQGEICLMDVEKENFNVI
HLCDYPIFSLCQAPNSPSSLYFAEGNDLKLYDERTGKVSATWNLHDHRINSIDFRPENPY
VFATSSTDRTVCIWDMRSMKKEGPEKLKVLEYNRAIQSAYFSPSGNMLATTSLDDTVRIF
NMDNFDESCILKHDNRTGRWLSTFKAIWSWNDNNLFVGNMKRAIDVISVDHSGKSLSASY
TAFLQSEHMTAIPGRFSLHPYKVGHLAGASSSGKVFLWTRA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggccgggctcaccgactacgagcgccggcgcgaggagaacatccgccgcaac
gagaccatcctcgcctccctccgccggcaggtcgctgagctctccgcctccgtccgcccc
tcccccagcctcaagcgccccaagaaggagcagccccgcgcgaggccggcaggacccgtc
gtcctccgccgctccccccgcacccgcggcattgcccccggcgagccctccgcctccacc
ggcgccaacacctccccggctgcgccgccgtccccgacaaagcctcgcaccacccggttc
tcctcctccctcgcctccgccctgcgagacgccaccgccgtcaagcccccgccgcggccg
gagggcggtatctgcgcggcggacgggttcgacgccgggagggagctggtgctgcgttcc
gcgaacgtgaggagagtggtgcctgagcgcatactctcggtgcggatcctgccgttggcc
gaccggaccgtggtggccgccgggaacaagctcggacatatcggactctgggatgtggat
ggtctcgtggaggatgaggaggacggagatggtgcaaatggggtgttccagtattttccc
cacaggggttctgttgggggtattgtgatgcaccctgacgcgcagaggaagatttacagt
tgtagttatcaaggtgaaatttgtcttatggatgttgagaaggagaactttaatgtgatc
cacttgtgtgactatcccattttctcgctttgtcaagcaccaaatagtcccagctccctt
tattttgccgagggcaatgacttgaaactttacgatgaaaggacgggtaaggtgtcagct
acatggaatttacatgaccatagaatcaactcaatagattttcgcccagaaaacccatat
gtgtttgccacaagctcgacggatcgaacagtatgtatatgggatatgagaagcatgaaa
aaggagggtccagagaagttgaaagttttggagtacaacagagccattcaatcagcttat
ttctcacccagtggcaatatgcttgcaacaaccagccttgatgacactgtccgaattttt
aacatggataactttgatgagtcatgtattcttaagcatgataacaggacaggcagatgg
ctgtccacgttcaaggcaatctggagctggaacgataacaacctctttgttgggaacatg
aaaagagcaatagatgttatctcagttgatcacagtgggaagagcctctcggcttcgtat
acggcgtttcttcagagtgaacacatgacagccatcccaggccggttttcgctgcacccc
tacaaagttggccatctggctggtgcaagctccagtggtaaggtgtttctctggaccaga
gcttga
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