Panicum virgatum (switchgrass): 120712048
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Entry
120712048 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120712048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120712048
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120712048
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120712048
Complex C
U4/U6.U5 tri-SnRNP related factors
120712048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
T2SSE
SRP54
nSTAND3
AAA_16
Flavi_DEAD
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120712048
NCBI-ProteinID:
XP_039853683
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All DBs
Position
6K:21585349..21596632
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AA seq
1049 aa
AA seq
DB search
MASDGQLREWVSDKLMTLLGYSKSVVVQYVIRLAKECSSTGDLVGKLVEFGFTSSVETRT
FAADIYAKVPRRASGINNYQRQEREAAKLVQKQSTYKLLADEDDNDADNQTSTSRKSLTI
PSSKSRKHFRRKADQDGGDNDDEDENVAKDSGRNVRGRTEEEDEEDHDNSDEEKERIRDQ
QERAQLEKNMREKDAANTRKLMERQLSKEEQEELNRRSQAMDNDTSDLRKFSRQAYLQKR
RDKKIEEIRDEILDHEYIFQDVKLTEAEEKELRYKKKIFDLVKEHVESADDVGEYKMPEA
YDMGENVNQEKRFSVAMQRYKDPEAKDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKRSSD
DYQYVFEDSIDFVKSSVIEGTQPEDDSDQEDIDAKDILKRELQDERKTLPIYKFRDELLK
AVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQPRRVAAMSVAARVSQEMGV
KLGHEVGYSIRFEDCTSEKTIIKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDI
LFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADY
IDAAIVTVLQIHVTQPPGDILVFLTGQEEIETVDEILKHRTRGLGTKISELIICPIYANL
PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPRTGMESLLI
NPISKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKSLG
IHDLVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMIVAS
EKYKCSDEVISIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNSWKE
TDYSTQWCYENYIQVRSMKRARDIRDQLEGLMERVEIEICSNASDLDAIKKAITSGFFHH
SARLQRDGTYKTVKNPQTVHIHPSSGLAEIRPRWVVYHELVLTTKEFMRQVTELKPEWLV
EIAPHYYQLKDVDDTGTKKLPKGQGRAAL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgatgggcagctcagggagtgggtctctgataagctcatgaccctcctggga
tactccaagagcgtcgtcgtccagtacgtcatcaggctcgcgaaggagtgctcttccact
ggcgacctcgtgggcaagttagtcgagttcgggtttacctcgtctgtggagacccgcacc
ttcgcagcggacatctacgccaaggttccccgcagggctagcggcatcaataattaccag
aggcaggaaagggaggcagcaaaacttgtccagaaacagagtacttacaagctgttggcc
gatgaggatgacaacgatgctgacaaccaaacatcgacgagtcgaaagagcttaacaatt
ccatcatctaaaagtcggaagcatttcaggaggaaagcagaccaagatggtggggacaac
gacgacgaagatgaaaatgtagcaaaggattctggaaggaatgtgcgggggcgaacagaa
gaggaggatgaagaagatcacgacaactctgatgaagagaaagaaaggataagagatcaa
caggaaagggcccagttagaaaagaacatgagagaaaaagatgcagcgaacacacgaaag
ttgatggagcgacaattatctaaggaagagcaagaggagcttaatagaagatctcaagca
atggacaatgacacatcagatctgagaaaattctcaaggcaagcgtatttgcaaaagcga
cgggacaaaaaaattgaggaaattcgtgatgaaattctcgaccatgagtacatttttcag
gatgtgaaactaactgaggcagaagaaaaggagttgagatacaagaagaagatctttgat
cttgtcaaggagcatgttgagagtgctgatgatgttggtgagtacaaaatgccagaagct
tatgacatgggtgagaatgttaatcaagaaaagagattctctgtggccatgcagcggtac
aaagatcctgaggccaaggataagatgaatccttttgctgaacaggaagcgtgggaggaa
caccaaataggaaaatccaaactgcaatttggttccaaagataggaagcggtcttctgat
gactatcagtatgtattcgaagatagcattgattttgttaaatcatcggtcatagaagga
acccagcctgaagacgattcagatcaagaagacattgatgcaaaagatattttgaaaagg
gagctccaggatgaacggaagactcttccaatttacaaatttagagatgagctgctcaag
gctgtagaagagtatcaggttatcgtcatagtgggtgaaactgggtctggtaaaacaaca
caaataccccagtaccttcatgaggctgggtatactgcgaaaggaaaggtcgcatgtact
caacctcgtcgagtggctgcaatgagtgttgcagcaagggtgtctcaagagatgggtgtt
aaactgggacatgaggttggttactctataaggtttgaagattgtacttcagagaaaaca
attattaagtacatgactgatggaatgcttctaagggagtttcttggtgagccagatttg
gccagctatagtgttgtcatggttgatgaggctcatgagcgtacactctctacggatatc
ttatttggtttggtgaaggatatttctcgttttcggccagacctgaagctgctcatttca
agtgccacccttgatgcagaaaaatttagtgactactttgattcagctcctattttcaag
atacctggaaggcgatacccagttgaaattcattacacaaaagctcctgaagctgattac
atagatgcagcaattgtcactgttttacagatacacgtgacacagcccccaggagatatc
ctggtattccttacagggcaggaggaaattgaaacagtagatgaaatccttaaacacaga
acaaggggcttaggaaccaaaatttcagaattgattatatgtcctatttatgcaaatcta
cctactgagctgcaagctaagatatttgagccaacccctgagggtgctcgaaaggtagtt
ttggccactaatatagcagagacttcattaaccattgatggtataaagtatgttattgat
ccaggcttttgtaagatcaaatcatacaatccccgcacgggaatggaatctctgcttatt
aatcctatctcaaaagcgtcagcaaatcagagggcaggaagatctggacggactggaccc
ggaaaatgcttccgcctatacacaagttacaactacatgcatgaccttgaagataatact
gttccagagatccaacgaaccaaccttgccaatgtcgtgcttactctcaagagtcttggt
attcatgacttggttaactttgactttatggatccacctccatcagaagccctattaaag
gccctggaacaactgtttgctctcagtgcactcaacagtcgtggagagttgacaaaaact
ggaagaagaatggcagaatttccattagatcctatgctgtcgaagatgatagtagcttca
gagaaatataagtgttctgatgaggtgatctccattgcctccatgttgtcaattggcaat
tcaatattttatcgtccgaaagacaaacaagttcatgcagataatgcaaggttgaacttc
cacactggcaatgttggggaccatatagcactactaaatgtttataactcatggaaagaa
acagactattcaactcagtggtgttatgaaaactatatacaggtgcgcagcatgaagagg
gcaagagatattcgggatcaactagaggggcttatggaaagagttgagattgagatttgc
tcaaatgccagcgacttggatgctattaaaaaggctataacttcaggtttcttccatcat
tctgcacggttgcagagggatggtacatataagactgtcaagaatcctcagactgtacat
atccatcctagttcaggactagcggagatacgtccacggtgggtagtataccacgaatta
gttctcacaacgaaagagtttatgcgccaggtgacggagctgaagcctgaatggctggta
gagatagcaccacactattaccaattaaaggatgtggatgacactggaacaaagaagtta
ccaaaaggccaaggaagagctgcattgtag
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