Panicum virgatum (switchgrass): 120712052
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Entry
120712052 CDS
T07260
Name
(RefSeq) probable galacturonosyltransferase 4 isoform X1
KO
K13648
alpha-1,4-galacturonosyltransferase [EC:
2.4.1.43
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120712052
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120712052
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.43 polygalacturonate 4-alpha-galacturonosyltransferase
120712052
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Structural polysaccharide
120712052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_8
Glyco_transf_24
DUF639
Motif
Other DBs
NCBI-GeneID:
120712052
NCBI-ProteinID:
XP_039853688
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Position
6K:23000567..23005242
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AA seq
643 aa
AA seq
DB search
MVRPRRILLALTMLSPLALYTSRLPAALNPIQMRDFSGEITNHGRGIKADKLNALPLETV
FSLKEPVGIVFSDELGGLSKESTESEGQESPSRKAGEHKSRVLSEVTAAADGIEVLEQVT
RREAQDGGLVSTDSEEQEKTTGSQQQSSSEEILLETMPKQTSDKVVAENSLTARTDGKTK
SFVLPDTLIRNIKDQLIKAKVYLGLGSIRANSQYLKDLRQRIREVQKVLGDASKDTDLPK
NANEKVKALEQMLIKGRQMQDDCSIVVKKLRAMLHSAEEQLHAHKKQTVLLTQLAAKTLP
KGLHCLPLRLANEYFSLDPDRQQFPNQNKLTNPKLYHYALFSDNILATAVVVNSTVLNAK
HPSDHVFHIVTDRLNYAPMRMWFLSNPPGKATIEVQNTGEFTWLNDSYSPVLKQLGSQSM
IDYYFGTNRANPDSNLKYRNSKYLSILNHLRFYLPEIYPKLDKMVFLDDDIVVKKDLTGL
WSINMKGKVNGAVETCGESFHRFDRYLNFSNPGIAKNFDPHACGWAFGMNVFDLAEWKRQ
NITQIYHSWQKLNQDRSLWKFGTLPPGLITFWNKTFPLSRSWHVLGLGYNPHVNSRDIER
AAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggccgaggaggatcctcctcgccctcacgatgctctcccccctcgcgctctac
accagccgcctcccggcggcgctcaaccctatccaaatgcgggatttctccggagaaatc
acgaatcatggccgtggcatcaaggcagacaagctgaatgcgcttcctctggaaactgtg
ttctctttgaaagaacctgtcggcatcgtcttctcggatgaactgggcgggttgtcgaaa
gaatcgactgaatctgaggggcaagaatcgccatcgagaaaggcaggggagcacaagagc
cgcgtgctctctgaagtcacggcggctgctgatggcatcgaagtgctggagcaagtgacg
aggcgggaggcacaggatggtggcttggtgagtaccgactcagaagagcaggagaaaacc
accggatcacagcagcaatcatcttcagaggaaattttactggagactatgcctaaacag
acatctgacaaggtagttgcggagaactccctaacagctagaacagatggtaaaactaaa
agctttgttttgcctgatacgctgatccggaatatcaaggatcagttaatcaaggcaaaa
gtctaccttggccttggatccattagagcaaattcccagtacctaaaagacttaaggcag
aggatacgagaagtccaaaaggtgcttggtgatgcatctaaggacactgatctaccaaag
aatgcaaatgagaaggttaaagcactggagcagatgctaattaagggcagacagatgcag
gatgattgttctattgttgtcaaaaagcttcgagctatgcttcactcagcagaggagcag
ctgcatgcacacaagaagcagactgttcttctgacacaacttgcagctaaaacccttcct
aaaggtcttcactgcctccccctgaggctagctaacgaatacttttcattggatcctgat
cggcagcagttcccaaaccaaaataaactcaccaacccaaaactgtatcattatgccttg
ttctcggataatatactagcaacagcagttgttgtaaattcaacagtgttaaatgccaag
catccttccgatcatgtcttccacatagtaactgacagactgaattatgctccaatgaga
atgtggttcctttctaatcctcctggaaaggcaacaattgaagtacagaacactggggag
tttacatggctaaatgacagctacagtccagtgctcaaacaacttgggtctcagtccatg
attgattactactttggaacaaatcgtgcaaacccagattcaaatttgaaataccgaaat
tcaaaatatttgtcaatccttaatcatttgcgattttacttacctgagatttatccaaag
cttgacaagatggtctttcttgatgatgatatagtagtaaagaaggatctgactggcctc
tggtcaatcaatatgaaggggaaggtaaatggtgctgttgagacttgtggagagagcttc
catcgcttcgatcgttacctgaatttctcaaatcctggtattgccaagaattttgacccc
catgcttgtggttgggcttttggaatgaatgtgtttgatctggctgaatggaagaggcag
aacataacccaaatctatcactcatggcagaagcttaatcaagacagatcgctttggaaa
tttggcactctccctccaggtttgatcacattctggaacaagacattccccctcagccgg
tcgtggcatgttcttggtctaggttacaacccccatgtaaacagcagagacattgaacgt
gctgcagtcatacattacaatggcaacatgaagccctggctagagattggcctgcccaag
ttccgaagctactggtcaaagtatctagattatgaccaacctttcctgcgggaatgcaac
atcaatccataa
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