Panicum virgatum (switchgrass): 120712082
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Entry
120712082 CDS
T07260
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120712082
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120712082
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120712082
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120712082
2.5.1.29 geranylgeranyl diphosphate synthase
120712082
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120712082
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
NIT
Motif
Other DBs
NCBI-GeneID:
120712082
NCBI-ProteinID:
XP_039853731
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All DBs
Position
1K:complement(45451056..45452597)
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AA seq
342 aa
AA seq
DB search
MALSSIFLPLPLPKLVSSSRSHRLLPVRASSDAPAASASFDLRRYWTSLIADVESELDAA
MPMRPPESIHAAMRYAVLPGAGKEGAAKRAPPVLCVAACELLGAPRSAALPAAAALEMLH
AASLVHDDLPCFDAAPTRRGRPSTHAAFGTDMAVLAGDALFPLAYTHIIAHTPSPDPVPH
AVLLRVMAELARAVGSTGMAAGQFLDLAGATALGEAEVMQVLTKKFGEMAECSAACGAML
GGAGPDEEAALRRYGRTIGVLYELVDDIRSASGNGKMRSNASVLRALGMDRALGIVEELK
AQAKTEADRFADKYGDRVLPLYSFVDYAVERGFELQDAAAAP
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggctctctcctccatcttcctccccctccccctgcccaagctcgtctcctcctccaga
tcccaccgtttgctccccgtcagggcgtcctccgacgcgcccgccgcctccgcttctttc
gatctgcgccgctactggacctccctgatcgccgacgtggagtccgagctcgacgccgcg
atgcccatgcgccccccggagagcatccacgccgccatgcgctacgcggtcctcccgggc
gccggcaaggagggggccgccaagcgggcgccccccgtgctctgcgtcgccgcctgcgag
ctcctcggcgcgccgcgctcggccgcgctcccggccgcggcggccctcgagatgctccac
gcggcgtcgctcgtgcacgacgacctgccgtgcttcgacgccgcgcccacgcgacgcggg
cgcccctccacgcacgccgccttcggcaccgacatggccgtcctcgcgggtgacgcgctc
ttcccgctcgcctacacccacatcatcgcgcacaccccgtcgccggacccggtgccccac
gccgtcctcctccgcgtcatggcggagctcgcgcgcgccgtcggatccaccggcatggcg
gcgggccagttcctcgatctggccggcgccaccgccctcggcgaggccgaggtcatgcag
gtcctgacgaagaagttcggcgagatggccgagtgctccgcggcctgcggcgccatgctc
ggcggggccgggcccgacgaggaggccgcgctgcggcgctacggccgcaccatcggcgtc
ctgtacgagctcgtcgacgacatccggagcgcgtcagggaacggcaagatgaggagcaac
gccagcgtcctgcgcgcgctgggcatggatcgcgcgctcggcatcgtggaggagctcaag
gcccaggccaagacggaggccgacaggttcgcggacaagtacggtgaccgggtgctgccc
ctgtacagcttcgtggactacgcggtggagagagggtttgagctccaggatgcagcagca
gcgccatga
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