KEGG   Panicum virgatum (switchgrass): 120712180
Entry
120712180         CDS       T07260                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120712180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120712180
   03041 Spliceosome [BR:pvir03041]
    120712180
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120712180
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120712180
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120712180
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 BRAP2 HSP90
Other DBs
NCBI-GeneID: 120712180
NCBI-ProteinID: XP_039853831
LinkDB
Position
6K:29820639..29826235
AA seq 353 aa
MAGKTKEFDGASPAKIFIGGLPKDTSMGTFKEHFGKYGDITDAVIMKDRYTQKPRGFGFI
TFADPAVVDRVIEDDHVINGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALKEDEFKE
FFSKFGKVVEHEIIRDHATNRSRGFGFIVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAE
PKKPSNPPPRSIDSEPRGRPYADSYDGFGSSYNYGGSFGPYRSPGSFGARPGGYSSAYGP
VDYGSGYGAYGGALGGGYRGESSLYSSRFGSTYGGSFGGGYGGGGSYAGGLAGAYGRDAG
GYGGSSYGPSYDSSGASAGSGAGYGTGGLYGARTGYGSTGGSSAAGRYHPYGR
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggccggaaagacgaaggagttcgacggcgccagccccgccaagatcttcatcggcggg
cttcccaaggacacaagcatgggtacattcaaagagcattttgggaagtatggggatata
actgatgctgtcataatgaaggaccgctacactcaaaagcccagaggctttggatttatt
accttcgcagatcctgctgttgttgacagagtgattgaagatgatcatgttatcaatgga
aagcaggttgaaattaaaagaactatccccaagggtgctgcccccttgaaagatttcaag
acaaagaagatttttgttggtggattaccctctgctctaaaagaagatgagttcaaggag
ttcttttcaaagtttggaaaggtggtggagcatgaaatcattcgtgaccatgcaaccaac
cggtcacgtggatttggttttatagtctttgatgcagaaaaaactgtagatgagttatta
gctaagaaaggcaatatgattgatctaaatggttctcaggtggaaatcaagaaggcagaa
ccaaagaaaccctctaacccaccacctcgttcaattgatagcgaacctaggggccgtcca
tatgcggacagttatgatggatttggcagctcctataactatggtggtagttttggcccc
tatagatcacctggaagttttggtgctaggcctggcggctacagtagtgcttatggtcct
gttgactatggtagtggctatggtgcatatggtggagcattaggaggaggatacagggga
gaatcctcactctattctagtcgttttggtagcacttatggaggaagctttggtggcgga
tatggtggtggtggcagttatgctggtggattagctggtgcttatgggcgtgatgctggg
ggttatggtggttctagctatgggcctagttatgattcttcaggtgctagtgctggttct
ggtgctgggtatggcacaggtggactctacggtgctaggacaggctatggtagcactggt
ggcagtagtgctgctggtcgttaccatccatatggaagatag

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