Panicum virgatum (switchgrass): 120712407
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Entry
120712407 CDS
T07260
Name
(RefSeq) probable ubiquitin receptor RAD23 isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03420
Nucleotide excision repair
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120712407
09124 Replication and repair
03420 Nucleotide excision repair
120712407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pvir03051
]
120712407
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120712407
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
120712407
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
120712407
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
UBA_Ucp12
CUE
Rad60-SLD
UBA_RAD5A
Dsc3_N
UBA_3
Ubiquitin_4
Crinkler
Motif
Other DBs
NCBI-GeneID:
120712407
NCBI-ProteinID:
XP_039854116
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Position
6K:36452022..36458762
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AA seq
413 aa
AA seq
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MKVSIKTLKGSSFEIEVDPSIKVADVKKLIETTQGQNVYPADQQMLIHQGNVLKNETTLE
ENKVLENNFIVIMLSKKGSSSAASATAKAPTSQASVDRAIPASPATQPPAAAPAPVAPVS
APAPTAAAGPAPTVAAIAPVSAPAPTAAAGPAPTVAAITEADPYGQAVSNLVAGGNLEAT
IHSILEMGGGAWDRDTVVRALRAAYNNPERAVEYLYSGIPEPEEAPAAAAAAPAPASGQP
VDPVQAPQSAQPAIPSSGPNANPLDLFPQALPNAASNAAGGENLDVLRNNTQFRGLLSLV
QANPQILQPLLQELGKQNPHIMQLIQENQAEFLRLINEPAEGAEGSLLDQFADAEMPQTI
AVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDEQMAANYLLDHMNDFDEAQQ
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtctccatcaagacgctcaagggctccagcttcgagatcgaggtggacccctcc
ataaaggttgctgatgttaaaaagctcattgagactacacaagggcagaatgtctaccca
gctgatcaacagatgcttattcatcaagggaatgttctaaaaaatgagacgacacttgaa
gagaacaaagttctggagaacaatttcattgttataatgttgtccaagaagggatcatca
agtgctgcttcagctactgctaaggctcccacaagtcaggcctcagttgatagggcgatt
cctgcctctcctgcaactcaaccaccagcagcagcaccagcacctgttgcgcctgttagt
gcacctgccccaactgcagcagctggtccagctcccactgttgcggcaattgcgcctgtt
agtgcacctgccccaactgcagcagctggtccagctcccactgttgcggcaatcactgaa
gcggatccttatggtcaagctgtgtcaaaccttgttgctggtggcaatctagaagcaact
atacattctattcttgaaatgggcggaggtgcatgggaccgtgacaccgttgtgcgggct
cttcgggctgcatataacaacccagagcgtgctgttgaatatttatattctgggattcct
gagccggaagaggcccctgctgctgctgctgctgcaccagctcctgcaagcggccaaccg
gttgatccagttcaggctccacaatcagcgcaacctgcaattccatcttctggacccaat
gctaatcccttggacctgtttcctcaggccctgccgaatgctgcttcaaatgctgctggt
ggtgaaaatctcgatgttctgcgaaataatacacagttcagaggtttgctttccttggtg
caggctaaccctcaaattttgcagcctttgcttcaagaactagggaaacaaaatccacat
attatgcagctgattcaggaaaaccaagccgagtttctgcgtttgatcaatgaacccgca
gagggagctgaagggagtttgctagatcagtttgctgatgctgaaatgcctcaaacaata
gcagtgacacccgaggagaatgaagctatacagcggcttgaacaaatgggctttgaccgc
gatctggttctagaggttttctttgcctgcaacaaggatgaacagatggctgccaactat
ctgttggaccatatgaatgactttgacgaagctcagcaatag
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