Panicum virgatum (switchgrass): 120712439
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Entry
120712439 CDS
T07260
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120712439
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120712439
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GFIT
Motif
Pfam:
RRM_1
RRM_8
RRM_5
DUF4523
Motif
Other DBs
NCBI-GeneID:
120712439
NCBI-ProteinID:
XP_039854150
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Position
6K:36934298..36941293
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AA seq
463 aa
AA seq
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MPSGSATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVE
FADQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQ
PNDVTIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDTPTALEAKNSLDGRSIPKYLL
PEHISACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGVVQPTVGPDGKIKEP
ESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTAAVAKQ
ALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTPSDPNAQLQTAAQPPALSNPGA
AWQNTDAPAAPFYASTAASAPAGVGQVPAWNPNMQAGAFASASTPYLSQPMMANSMPHYP
AIGTSSGAPPVPFQASQQMPQYGIPPGAPPHAPPAGQPLYFPK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggggtcggcgacgcagttccgctacacgcagacgccgtccaaggtgctgcac
ctgcggaacatgccgtgggagtgcaccgaggaggagctcgtcgagctctgcaagcccttc
ggcagggtcgtcaacaccatgtgcaacgtcggcgccaaccgcaaccaggccttcgtcgag
tttgcggatcaaaaccaggcaatttcaatggtttcctattatgcttcatcttcagaacct
gctcaagtccgtggtaaaactgtatatatccaatattcaaacaggcaagaaattaccaac
aataaaggcactggtgattcttctggcaatgtcctgcttgtcacttttgaaggtgttcag
cctaatgatgttaccatagaagtcattcatttggtattttcagcatttggatttgttcac
aagatagctacttttgagaaagcagctggtttccaggcacttatccagtatactgacacc
ccaactgctcttgaagctaaaaactcattggatggaagaagcattccaaaatacttactt
ccagaacatatcagtgcctgccacatgcgcataaccttttctgcgcacaaggatttgaat
atcaaatttcagtcacaccgcagcagggattacactaatccttatcttcctgtgaaccaa
actgcaattgagggggttgtgcagcccacagtaggccctgatggaaagataaaggagcct
gagagcaatgtacttctagcatcaattgagaacatgcagtatgctgtgacagtcgatgtt
ctgcacactgtgttttctgctttcggcactgttcaaaaaattgcaatgtttgagaagaat
ggtggaatgcaggctttaattcaatatccagatataacaactgcagcagttgctaaacaa
gccctggagggacactgcatatatgatggtggttactgtaagcttcatctgtcatactct
cgtcatactgatctcaatgtaaaggcgcatgatgagagaagcagggattacactccttca
gaccctaatgctcaactgcaaactgctgcacagccaccagctctaagcaatccaggagcg
gcatggcagaacactgatgcaccagctgctccgttttatgcaagcacagcggcatcagct
cctgctggagttggacaagtgcctgcttggaatcctaacatgcaggcaggggctttcgca
tctgcatccaccccgtacctgagccaaccaatgatggcaaactccatgcctcactatcct
gctattggaaccagctcgggcgccccaccggtaccatttcaggcatcacagcagatgccc
cagtacggcatcccccctggtgctccgccccatgcaccaccagctggccagccattgtac
ttcccgaaataa
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