Panicum virgatum (switchgrass): 120712466
Help
Entry
120712466 CDS
T07260
Name
(RefSeq) protein DETOXIFICATION 49-like
KO
K03327
MATE family, multidrug and toxin extrusion protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120712466
Transporters [BR:
pvir02000
]
Solute carrier family (SLC)
SLC47: Multidrug and Toxin Extrusion (MATE) family
120712466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MatE
Motif
Other DBs
NCBI-GeneID:
120712466
NCBI-ProteinID:
XP_039854188
LinkDB
All DBs
Position
1K:46061483..46063540
Genome browser
AA seq
556 aa
AA seq
DB search
MSSCAAAAAAGEEALLTAPLLAPVVAVAGELPPPVLPARKPRGRLARAVKEAWSVSLSVT
FPMAPSVSAAAAGAEARSILGLALPMILTGLLLYLRSMISMLFLGRLGGLALAGGSLAIG
FANITGYSVLSGLAMGMEPICGQAFGAGHNTLLGVTTQRTVLMLLAAAVPIAGLWAHMRP
LLLLCGQDAGIAAAAETYILASLPDLLLQALLHPVRIYLRAQSINLPLTLCAALAIALHL
PINYVLVSVLGLGIRGVAFASVLANLNLVLFLLAYILIRGVHRRTDGFALSPESFRGWGE
LAGLALPSCVSVCLEWWWYEIMILLCGLLANPQATVASMGILIQTTSLIYIFPSSLGFGV
STRVSNELGANRPAHAARAATVGLVLGFAFGGAASAFAYLVRGAWAAMFTADPAIVALTA
SVLPILGACELGNCPQTAGCGVLRGSARPKDAASINLRSFYLVGTPVALVLAFWYHYDFQ
GLWLGLLAAQAACVVRMLLVIGRTDWAAEAKRAQQLAGAGGAVEIKDGMEVGAAGGDDEP
SMPIVVVIERPPKDQC
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttgcgcagccgccgccgccgccggcgaggaggcgctcctcacggcgcccctg
ctcgcccccgtggtggccgtggcgggagagctgccgcccccggtgctgcccgcgcgcaag
ccgcgggggcggctcgccagggcggtgaaggaagcctggtccgtgtccctgtccgtcacg
ttccccatggcgccgtccgtgtcggcggccgcggcgggcgcggaggcgcgctccatcctg
ggcctcgcgctgccgatgatcctcacgggcctgctgctctacctccgctccatgatctcc
atgctcttcctcggccgcctcggcgggctcgcgctcgcggggggctccctcgccatcggc
ttcgccaacatcacgggctactccgtgctctcgggcctcgccatggggatggagccaatc
tgcggccaggccttcggcgccggccacaacaccctcctcggcgtcaccacgcagcgcacc
gtgctcatgctcctcgccgccgccgtgcccatcgccggcctctgggcgcacatgcggccc
ctgctcctgctctgcggccaggacgccggcatcgccgccgccgccgagacctacattctc
gcctccctcccggacctgctcctccaggcgctcctccaccccgtccgcatctacctccgc
gcgcagtccatcaacctgcctctcaccctctgcgccgcgctcgccatcgcgctccacctc
cccatcaactacgtgctcgtctctgtcctcgggctcggcatccgcggggtggcattcgcc
tccgtcctggccaacctcaacctcgtcctcttcctcctcgcctacatcctcatcaggggc
gtgcaccgccgcaccgacggcttcgcgctctcgcccgagagcttccgcggctggggcgag
ctcgccggcctcgcgctgccgagctgcgtcagcgtctgcctcgagtggtggtggtacgag
atcatgatcctgctgtgcggcctgctcgccaacccgcaggcgacggtggccagcatgggc
atcctcatccagaccacgtcgctcatctacatcttcccttcctcgctcggcttcggcgtc
tccacgcgcgtcagcaacgagctcggcgccaaccgccccgcccacgccgcccgcgcggcg
acggtcggcctcgtgcttgggttcgcgttcggcggcgcggcgtccgcgttcgcgtacctc
gtgcggggcgcctgggcggccatgttcacggccgacccggcgatcgtcgcgctcaccgcg
tccgtgctgcccatcctgggcgcctgcgagctcggcaactgcccgcagaccgccggctgc
ggcgtgctgcgcggcagcgcgcgacccaaggacgccgccagcatcaacctccgctccttc
tacctggtgggcacgcccgtggcgctcgtcctcgccttctggtaccactacgacttccag
ggcctgtggctgggcctcctcgcggcgcaggcggcttgcgtcgtgcgcatgcttctggtg
atcggccggacggattgggccgccgaggccaagcgcgcgcagcagctcgccggagcagga
ggcgcggtggagatcaaagacggcatggaggttggagcggccgggggggacgacgagccg
agcatgcctatcgtcgtggtgatcgagcgaccgcccaaggatcagtgctga
DBGET
integrated database retrieval system
