Panicum virgatum (switchgrass): 120712554
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Entry
120712554 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120712554
KO
K15082
DNA repair protein RAD7
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120712554
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
120712554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_4
LRR_NXF1-5
Cep57_CLD_2
Motif
Other DBs
NCBI-GeneID:
120712554
NCBI-ProteinID:
XP_039854300
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All DBs
Position
6K:complement(38990165..38995293)
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AA seq
950 aa
AA seq
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MPHLRSRAKASPPSPPAPAGVPQGTPAPSPSTSLRLGLGPASPDDDGFDTKSPAAAPPRR
SLRLAGAAATPATPAAPDGGSSGSGPGSGGGVKRTGRPRARTSASASSPAAASPTSGNFG
SDGGGLSAGGSGSGGAGPFLSLRSGTRIAKRPVEAGGEAGPGPSGGGQVRDEMPPRGAGT
PTKRRRSVLIGGVETEYVADSESGSDEDCQMLGQSGARVPGAQGNTAQSGVEPSAVAMIM
DGTENGAGTPTKRRRSVLVGGVETEYVADSESGSDGDCAMLGQSGVRMPGAQVNTGQSGV
ELNAVAMSIDGTEDGTRDGPAKAGNGESGGVIDEQLVYPAGSPSSPEADIIVDMYFKKEL
RQYKLRKEGKAKEKLVLGNNHSRGVDSGYVSTSLKLSTDSKGKGKMVVEDSLSSLSSSED
ESDSKPVDSKEIQSEHDPDSEPVDAKEVQSNSGSVSAYKEPLRRQAAREQAIKLAPKFAF
FKPDKDEPSEDEEEEELEPSSDPQDWPGPFATAARIYEEREAKLRARESNSSKVNKVANK
AIIWSPSKGQKIPVRARAAPSLTSLCINTLVEHSERIESLGDIPEELKHKLLKILCHSRK
MNIHLLNELMCDSPAELHLSECSWLSDDDFEKTFGKCKTDSLQGLQLDISGRCMPDYILP
TTLAKAPNYMPLLRKISLKGNYRLSDKGLETIISAAPSLSSLNLCECSLLTSSGIVILAD
KLHSVLRELYIDDCTNVDAMMILPALQKINHLEALSMSGIQSVCDKFVNELLAVHGSNMK
ELAFAGCSKLTSSSIKAIGRNCPQLTSLDLRNLNRLRDSAMRHLRYGCRLIRKLKLQRNT
FSDEAVSRYLEESGGCLTELMLNNIEKVGDLTALAISRNCSVRLEALDLSFCRELTNEAL
GLIVDSCPSLRVLKLFGCTQITDLFLKGHSNTFVKIIGIEGSILEQMDHR
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgccccacctccgctcacgcgccaaggcgtccccgccgtcaccgccggcgccggccggc
gtcccgcagggcacccccgcgccgtccccgtccacgtccctccgcctcggcctcggcccc
gcgtcccccgacgacgacggcttcgacaccaagtccccggccgcggcgccgccccgccgc
agcctgcgcctcgcgggcgccgccgccaccccggcgacccccgccgcgccggacggcggt
tcctccggctccgggcccgggtccggcgggggcgtcaagaggacggggaggccccgcgcc
cgcacctccgcctccgcctcctcccctgccgccgcctcgccgacgtccgggaacttcggg
agcgacggcggcggcctgtcggcgggcggctccggctccggcggcgcagggccgttcctg
agcctgcggtcggggacccggatcgcgaagcggccggtggaggccggcggggaggcgggg
cccgggccgtcaggcggaggccaggtgcgcgacgaaatgccgccccggggcgcgggcacg
ccgacgaagcggcggaggagcgtgctgatcgggggagtggagacggagtacgtggccgat
tcggagagcggctccgacgaggattgccagatgctggggcagagtggcgcgagggtgccg
ggcgcgcagggaaacacggctcaaagtggggtggaacctagtgctgttgctatgatcatg
gatgggactgaaaatggcgcgggcacgccgacgaagcggcggaggagcgtgctggtgggg
ggagtggagacggagtacgtggccgattcggagagcggctccgatggggattgcgcgatg
ctggggcagagtggcgtgaggatgccgggggcgcaggtaaacactggtcaaagtggggtg
gaactgaatgctgttgctatgagcattgatgggactgaagatggcacgagggatggtcct
gccaaggcaggcaatggggagtctggtggggtgattgatgagcagttagtgtatcctgcg
ggaagtccttcgagtcctgaagcagatataattgtggatatgtatttcaagaaagagttg
cgccaatacaagcttagaaaggaaggcaaagcgaaagagaagctagttttggggaacaac
cattctcgtggtgtggatagtggatatgtatccacttccctcaaattaagtactgatagt
aaaggaaagggaaagatggttgtagaagatagtttgtcatctctgagctcaagtgaggat
gagtcggattcgaaaccagtggattctaaagagattcagagtgagcatgacccagattcg
gaaccagtggatgctaaagaggttcagagcaactcaggatcagtttctgcttataaggag
ccacttcgcaggcaagcagcaagagagcaagctatcaagctggcccctaagtttgcattc
ttcaaaccagataaagatgaacctagtgaagatgaagaggaagaagagttagagcctagt
tctgaccctcaggactggccaggcccatttgcaactgctgccaggatatatgaagagaga
gaagctaagttgagagctcgagaatcgaattcttcgaaggtcaacaaggttgctaataag
gccatcatttggtctccttcaaaggggcagaaaattccagtacgagctcgggccgcccca
tcacttacaagcttatgcataaatactcttgtagaacattctgaacgcattgaatcactt
ggagatatcccagaggagctaaagcataagctgttaaagattctgtgtcattctaggaag
atgaatatccatcttctcaatgaactaatgtgtgatagtcctgcagaactgcatctgagt
gagtgttcatggctgagtgatgacgactttgagaaaacttttgggaaatgcaagacagat
agcctgcagggtttacagcttgatatatctggaaggtgcatgcctgattacatattgcca
acaaccttagccaaggctcctaactacatgccattgttgagaaaaatatctctgaaggga
aattaccgtctctctgacaagggtttagaaacaatcatctccgctgcaccttctctgagc
tcactaaatttgtgcgagtgctctcttctcacttcatctggaattgttattcttgctgac
aagttacattcggtacttagagaactgtatatagatgactgcacaaacgtggatgctatg
atgattctccccgcactacagaagatcaatcatctagaggctttgtcaatgtctggaata
caatctgtgtgtgacaagttcgtgaatgagctccttgctgtacatggttcgaatatgaag
gagctagcatttgctggttgctcgaaacttacctcatcttccatcaaggctattgggcgg
aattgtccacaactaacttccttagatctccgcaacttgaataggttgcgtgactcagca
atgaggcatcttcgctatggttgtaggctaataaggaaactgaagcttcaaagaaacaca
ttcagtgatgaagcagtttctcgatatttggaagaatctggaggatgcctaactgagtta
atgcttaacaatattgagaaggttggagaccttactgctcttgcaatttctcgcaattgc
tctgttcggctggaggctctggatctttccttctgccgtgaactgaccaatgaagctttg
ggtttgattgtcgacagctgcccatcgttgagggttctgaagctatttggttgtacccag
atcacggatttgttccttaagggtcactcaaatacattcgttaaaatcatcgggatagaa
gggagcatactggagcaaatggaccaccgttag
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