Panicum virgatum (switchgrass): 120712557
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Entry
120712557 CDS
T07260
Name
(RefSeq) bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like
KO
K12451
3,5-epimerase/4-reductase [EC:5.1.3.- 1.1.1.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00541
Biosynthesis of various nucleotide sugars
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01250
Biosynthesis of nucleotide sugars
Module
pvir_M01021
UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
120712557
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
120712557
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Motif
Pfam:
RmlD_sub_bind
Epimerase
GDP_Man_Dehyd
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
DUF7381
Motif
Other DBs
NCBI-GeneID:
120712557
NCBI-ProteinID:
XP_039854304
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Position
1K:46168615..46171742
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AA seq
305 aa
AA seq
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MGVATNGSAAEQAPAPALKFLIYGRTGWIGGLLGGLCAARGIPFAYGAGRLENRAQLEAD
IDAAAPTHVFNAAGVTGRPNVDWCEAHRAETVRANVVGTLTLADVCRGRGLVLINYATGC
IFEYDDAHPLGSGVGFKEEDTPNFVGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLS
NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEM
YRDYIDPSFSWKNFNLEEQAKVIVAPRSNNELDQTKLKNEFPELLSIKESLIKYVFEPNR
KTSKA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcgccaccaacggctcggcggcggagcaggcgcccgcgccggcgctcaagttc
ctcatctacggccgcacgggctggatcgggggcctgctgggcggcctctgcgcggcgcgc
gggatccccttcgcctacggcgccggccggctcgagaaccgcgcgcagctcgaggccgac
atcgacgccgcggcgcccacgcacgtgttcaacgccgcgggcgtcacgggccgccccaac
gtcgactggtgcgaggcgcaccgcgccgagaccgtccgcgccaacgtcgtcggcacgctc
acgctcgccgacgtctgccgcggccgcgggctcgtcctcatcaactacgccaccgggtgc
atcttcgagtacgacgacgcgcacccgctcggctccggggtcggcttcaaggaggaggac
acgcccaacttcgtcggatcattctactccaaaaccaaggccatggttgaagaactgctc
aagaactacgagaatgtttgcacccttcgtgtaaggatgcctatttcatcagatctctcc
aatccccgcaatttcattaccaaaatcaccagatacgagaaggttgtcaacatcccgaat
tcaatgacaatactggatgaacttcttcccatctcaatcgaaatggcgaagagaaacctc
actggaatatggaatttcacaaatcctggtgtggtgagccacaatgagatactcgagatg
tacagagactacatcgaccccagcttctcttggaaaaacttcaatctggaagagcaagca
aaggtcatagttgcaccgaggagcaacaatgagctcgaccaaactaagttgaagaatgag
ttcccggagcttttgtccatcaaggagtcgctgatcaaatacgttttcgagccaaatcgg
aagacgtccaaggcttga
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