KEGG   Panicum virgatum (switchgrass): 120712591
Entry
120712591         CDS       T07260                                 
Name
(RefSeq) DNA polymerase epsilon subunit B-like isoform X1
  KO
K02325  DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03030  DNA replication
pvir03410  Base excision repair
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120712591
   03410 Base excision repair
    120712591
   03420 Nucleotide excision repair
    120712591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120712591
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120712591
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     120712591
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    120712591
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      120712591
SSDB
Motif
Pfam: DNA_pol_E_B Dpoe2NT DNA_pol_D_N CcmE
Other DBs
NCBI-GeneID: 120712591
NCBI-ProteinID: XP_039854355
LinkDB
Position
6K:39587459..39605771
AA seq 533 aa
MAAPSAATRRKLQRKFRLRGFTLKVDALEEAAAFLERFPEAEDDALDLLLDELDKEPLQS
SILDRDAVRRVVALLVEAEEAVDAASPAVASARSALRVVDAFLVPRFHYDPIKKVFYEHT
GRLPIHGEAGDKASLYRDRYQVLLQRLSRDKYFSKPAFDTVVTEDGSCEITSIQSLIGCT
GRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFVENTVIVAEGELLSNGIFQV
NTCGFPPLEDREASLSLLMGLDFFGGGVIPTEETLRLSPLEKKAVNDMFVILSDVWLDNP
ETMEKLAIVLDGYDSVEVVPSLFVLMGNFCSRPCNLAFNSFEELRLQFGKLGEIIAARSR
LKEHSRFLFVPGPDDAGPSKALPRCALPKYLIEELQKHIPNAIFVSNPCRVKFYTQEIVF
FRQDLLYRMRRSCLIPPTTEETNDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHCLRLY
PTPHTIVLADKSEQKAFKYTGITCFNPGSFANDSTFAAYRPCTKEVELSALEG
NT seq 1602 nt   +upstreamnt  +downstreamnt
atggcggcgccgtcggcggccacgcgccggaagctgcagcgcaagttccgcctgcgcggc
ttcacgctcaaggtcgacgccctcgaggaggcggccgccttcctcgagcgcttccccgag
gccgaggacgacgcgctcgacctcctcctcgacgagctcgacaaggagccgctgcagtcg
tcgatactggatcgggacgcggtccggcgcgtggtggcgctgctcgtcgaggcggaggag
gcggtcgacgcggcgtccccggcggtcgccagcgcccggtccgcgctgcgggtggtggac
gcgttcctcgtgccgcggttccactacgacccaatcaagaaagtgttctacgagcacact
ggcagattacctatccatggagaagctggagataaagcttccctttatagggacaggtac
caagtgctacttcagaggctatctcgcgataaatatttctctaagccagcttttgacacg
gttgtgactgaagatggcagttgcgagattacttctatacagtctctaattgggtgcact
ggacggagatggatcatgggggtcatttcacagttggaggagcgccagttctacttggag
gatcttactggagcagttccaattgacttatcaaatgccaaaatcacgtcaggttttttt
gttgaaaatactgtgatcgtggctgaaggggagctgctttcaaatggcattttccaggtt
aatacatgtgggtttcctcccctagaggacagggaagcatcactttcattgctcatgggt
cttgatttctttgggggaggtgtgataccaactgaagaaacactaaggttatcgccgctc
gaaaaaaaggctgtgaatgatatgtttgtcatactttcggatgtttggctggacaatcct
gagactatggagaagttggctattgttcttgatggttatgatagtgtggaagtggtgcct
tccctctttgttttgatgggcaatttctgttctcgtccctgcaatctagcattcaattct
tttgaagaacttagattgcaatttggaaagcttggtgagataattgcagctcgatctaga
ttaaaggagcatagccgtttcttattcgttccaggtcctgatgatgcaggcccttctaaa
gctctcccaaggtgtgcacttccaaaatatctaattgaagaacttcagaagcacatccca
aatgcaatatttgtaagcaacccctgcagggtgaagttttatacacaagaaattgtgttt
ttccggcaagatctcctttacaggatgcggcggtcatgtctcattccaccaacaacggaa
gaaacaaatgacccttttgagcatctggtagcaactatcacccatcagagtcatctttgt
ccattgcctcttactgttcaacctatcatatggaattacgatcattgccttcggctgtat
ccaactcctcacacgatagtattggctgacaaaagcgagcagaaagccttcaaatacact
ggaattacgtgctttaatccaggttcatttgcaaatgatagcacctttgcagcataccga
ccttgcactaaggaggttgaactttctgcactagagggctaa

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