KEGG   Panicum virgatum (switchgrass): 120712603
Entry
120712603         CDS       T07260                                 
Name
(RefSeq) signal recognition particle 54 kDa protein, chloroplastic-like
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03060  Protein export
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    120712603
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pvir02044]
    120712603
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     120712603
Secretion system [BR:pvir02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   120712603
  Eukaryotic Sec-SRP protein
   120712603
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N AAA_22 Zeta_toxin CbiA ParA CLP1_P ArsA_ATPase AAA_30 nSTAND3 APS_kinase NTPase_1 MeaB cobW 6PF2K AAA_18 AAA_16 AAA_17 AAA_33 MMR_HSR1 AAA_31 NPHP3_N ResIII AAA Thymidylate_kin ATP_bind_1 AAA_19 ATPase KAP_NTPase AAA_25 GET2
Other DBs
NCBI-GeneID: 120712603
NCBI-ProteinID: XP_039854365
LinkDB
Position
6K:complement(39732695..39738573)
AA seq 555 aa
MEATSTLALSSSPAAARRSPEKSAVASLHLRRFPTTSSLHLRAVQSPALRAHSSAFQGWR
RRRRAGGLVVRAEMFGQLTTGLESAWNKLRGVDVLTKENIAEPMRDIRRALLEADVSLPV
VRRFIESVSEKAVGTDVIRGVSPDQQLVKVVNDELVQLMGGEVSDLSFAKSGPTVILLAG
LQGVGKTTVCAKLALYLKKMGKSCMLVAADVYRPAAIDQLNILGKKVGVPVYSEGTDAKP
SQIAKNGLKEGKSQKEDVIIVDTAGRLQVDKAMMNELKEVKKAVNPTEVLLVVDAMTGQE
AAGLVSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPD
RMAQRILGMGDVLSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQMIAKMGSFSR
LIGMIPGMNKVTPAQIREAEKNLKFMESMINVMTPEERERPELLAESRERRRRVAKDSGK
TEQQVSQLVAQLFQMRARMQKMMGAMQGKDSPNMDELMESIKAEEQGAADAGRRRRKYGN
LRQRQLDAMRGFRRR
NT seq 1668 nt   +upstreamnt  +downstreamnt
atggaggccaccagcacactcgcactctcctcgtcccccgccgccgcgcgacgctcgccg
gagaagtcagccgtagcctccctccacctccgccgcttccccacgacctcctcgctccac
ctccgcgcggtccagagcccagcgcttcgcgctcactcctcagccttccagggatggagg
aggcggaggagggcgggcgggctggtagtccgggcggagatgttcgggcagctaactacc
ggcctcgagtctgcctggaacaagctgcggggagtcgatgtattgacaaaggaaaacatc
gccgagccaatgcgggatattagaagagcacttttggaggcggatgtaagcttgccggta
gtaaggagatttattgaatctgtaagtgaaaaggctgtagggaccgatgttatccgaggt
gtcagtcctgatcaacagctggtgaaggttgttaatgatgaacttgtacaactgatgggt
ggtgaggtatcagatttgtcatttgcaaagtctggcccaactgttatcttgttagcaggt
ctgcaaggtgttgggaagactactgtttgtgcaaagcttgccttgtatctaaaaaaaatg
gggaagagttgtatgctggttgctgcagatgtttataggcctgctgccattgatcaactc
aatattctgggtaaaaaggttggtgtaccagtttactcagagggaactgatgccaagcct
tctcaaatagccaaaaatggtttgaaggaaggaaaaagccagaaggaggatgtaattata
gtggatactgctggaagactgcaggtagacaaagcaatgatgaatgagttgaaagaagta
aaaaaggctgtgaatcctacagaagttctgcttgtggttgatgccatgactggccaagaa
gctgcaggattggtcagctccttcaatgacgagattggtataactggtgctatacttaca
aaactggatggtgactcaagaggtggagcagcactaagtgttaaagaggtgtcaggaaag
cccatcaagttcgtagggcaaggagaacgcattgaagatcttgagcctttctatccagat
cgtatggcacagcgtatcctgggaatgggagatgtactctcatttgtagaaaaagcacaa
gaagtgatgcgccaagaagatgcagaggaattacagaagaagattttgagtgcaaaattt
aacttcaatgactttctgaagcaaacacaaatgatcgcaaaaatgggttcgttcagtcgt
ttaattggcatgattccaggcatgaacaaggttaccccagcacaaattcgtgaagctgag
aagaatctcaagtttatggaatcaatgatcaatgtgatgactcctgaggaaagggaaaga
ccagaattactggctgaatcacgtgagagaaggagaagagtggccaaggactctggaaag
actgaacagcaggtgagccaattggttgcgcagctcttccaaatgcgtgcccgaatgcaa
aaaatgatgggtgccatgcaaggaaaagactctcccaacatggacgaactcatggagtca
attaaggctgaggagcagggtgctgccgatgctggaaggcgcaggaggaagtatggcaac
ctgaggcagcggcaactggatgcgatgcgtggtttccgccgacgttga

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