Panicum virgatum (switchgrass): 120712708
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Entry
120712708 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SC35-like
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120712708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120712708
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120712708
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
YflT
Motif
Other DBs
NCBI-GeneID:
120712708
NCBI-ProteinID:
XP_039854501
LinkDB
All DBs
Position
6K:complement(41186407..41190021)
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AA seq
264 aa
AA seq
DB search
MSHFGRTGPPDIRDTFSLLVLNISFRTTADDLFPLFERYGKVVDVFIPRDRRTGDSRGFA
FVRYKYADEAQKAIDRLDGKNVDGRNIMVQFAKYGPNAEPIRKGRVKEVVEKPRDRSRSR
SPRPRHRDREHRRRSRSRSRERHGRDRDRDYRRQSRSRSRSRSRSPSSSPDHKSHRRARD
DDKRRSRSKSRSKSRSRSRSRSHSYHSASPARRSASPRNCKSSPPRRSPTPEKHTNGKDF
PPSRSVSPSPKHAGSRSPGSESKE
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacttcgggaggacggggccgccggacatccgcgacaccttctcgctcctcgtc
ctcaacatcagcttccgcaccacggcggacgacctcttcccgctcttcgagcgctacggc
aaggtcgtcgacgtcttcatcccgagggaccggaggaccggggactcgaggggtttcgcg
ttcgtgcggtacaagtacgctgacgaggcgcagaaggctatagatcgccttgatgggaaa
aatgtggatggcaggaacatcatggtgcagtttgccaagtacggccccaatgctgagcca
atccgtaaaggaagggtcaaagaggttgttgagaaaccacgagacaggtcaagaagccgt
agtccaaggccaaggcacagagacagagaacataggaggcgaagtcgcagcaggagcaga
gaaaggcatgggcgtgatagagacagggactatcgtcgccagagcagaagcagaagcaga
agcagaagcagaagtccgagttcaagtccggaccacaaaagtcatcgtagagcaagagat
gatgataagcgcaggagcaggagcaagagtaggagcaaaagcagaagcagaagcaggagt
agaagccactcataccatagtgcttcacctgctcggcgcagtgctagccctcgcaattgc
aaaagctcaccaccaaggaggagccccactcctgaaaagcacaccaatggaaaagatttt
cctccatcacgcagtgtttctccatcaccaaagcatgcaggctcccgtagcccaggcagt
gagagcaaggagtaa
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