KEGG   Panicum virgatum (switchgrass): 120712730
Entry
120712730         CDS       T07260                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120712730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120712730
   03041 Spliceosome [BR:pvir03041]
    120712730
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120712730
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120712730
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120712730
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 RRM_Nup35 RRM_RdRP1_2
Other DBs
NCBI-GeneID: 120712730
NCBI-ProteinID: XP_039854530
LinkDB
Position
6K:complement(41506314..41510942)
AA seq 385 aa
MGKAETRTRRRGGGGGGGGDGGGGGNPGKIFVGGLPRDTTDATFVRHFGQYGEIIDSVIM
KDRHTSQPRGFGFITYSDTAVVDKVIEETHVINGKQVEIKRTIPKGAMQSSSKDFKTRKI
FVGGLPSALTEDDFKSFFERYGTVVDHQIMFDRETKRSRGFGFVVFASEETVDDLLANGN
MIDLAGSKVEIKKAEPKKSSNPPPSGRGRSSRSSYDSGSRDHLSSDNYGGLANPYGSYRG
GGFDPYRGDAGFSGSRLGSYGGMGEFGVGYGRYYAGLGAYGAASSYGYPSRFGLYGGYGG
GYAGGDLSGYRRTVADESFGAPGNSGFGGGADEGFGGPGPGSSGYGGSAYGVAYDPALGG
YGPASTPDRNKGSFTGGFGRYHPYG
NT seq 1158 nt   +upstreamnt  +downstreamnt
atggggaaggcggagacgagaaccaggcggcgcggcggcggcggcggcggtggcggcgac
ggaggcggcggtggcaacccggggaagattttcgtcggagggctgccgcgggacaccaca
gatgctacatttgtgcggcattttggccagtatggggaaataattgattcagtaataatg
aaagataggcacacatctcagccgcggggttttggcttcattacatactctgacactgct
gttgttgataaagtgatagaggaaactcatgtcatcaacggaaagcaagttgagattaaa
agaaccataccaaagggtgcaatgcagtctagctctaaggatttcaagactagaaagata
tttgttggtgggctcccctcagcactaacagaagatgatttcaagagtttctttgaaaga
tatgggactgtggtagaccaccagattatgtttgatcgtgaaacaaaacggtctagaggc
tttggatttgtagtttttgcttctgaggaaactgtagatgatttgttagcaaacggaaat
atgattgatcttgctggttcaaaggtggagatcaagaaggcagaaccaaagaaatcctca
aacccacctccatcagggcgtggtagaagttctagatcttcatatgatagtggctctagg
gaccacctttcttctgataactatggtggattggctaatccttatggcagttacaggggt
ggtggatttgatccttataggggcgatgcaggtttcagcggtagtaggcttggcagctat
ggtgggatgggtgaatttggtgttggatatggtcgttactatgcaggtttaggggcatat
ggagctgcatcttcatatggttatcccagtcgctttgggttatatggaggttatggtgga
ggttatgctggtggggacttgagtggctatagacgcactgttgctgatgagagctttggt
gcccctggtaattctggttttggtggtggtgctgatgagggctttggtggccctggccct
ggtagttctggctatggtggttctgcctatggtgtggcatatgatcctgctctaggtggt
tatggacctgctagcacacctgacaggaataagggaagctttactggtggatttggacga
tatcacccgtatggatga

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