Panicum virgatum (switchgrass): 120712757
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Entry
120712757 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120712757
KO
K14315
nucleoporin NDC1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120712757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120712757
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120712757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
120712757
NCBI-ProteinID:
XP_039854559
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All DBs
Position
1K:46433324..46439308
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AA seq
499 aa
AA seq
DB search
MDRAPPRGAPRDAVGQRWLAVFAFQAVLSAAASALHLAASPRGRRHPHLGVPAGLLLALH
PLLACAATGLLALALLLTASPRPRQPPLQRRALATALLAAAGALSVGAAAAILPEDAGWA
AVAGLGFRGAVLGAVFAAHYFGRGRWLLQFPVVQRPLFYGLKMGLLPSGKRALKVSLQAF
CLSFVLILLLPQQFRIGGSIGSQILTQISIFIVTTGVSFCLEISHHFVQVVHTRRCNFAP
PQSTAAAETNPTEFILETLEQSDPRSLIQYLAYQDLCVVSESNLEPWRRGAFFEESGETY
KRIVTACLKPLEEFTSIIARALEEYSTESLSQQSLLFSAFDDSQICTWCARTLAGLTARS
HQEDRYGVAQLTGCNAAVMTTLLSALLAIEACLGKKMNPQPALGPENIKWANLSTGRKGS
GIAIATTQKGGLHKKVYAMADVLRTSVYQIVSAFIDDLRANAKPASLEKNWISEGRKPIY
GSQAMLVQKLGLFIEYRAV
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggccccgccgcgcggcgcgccccgcgacgccgtgggccagcggtggctcgcc
gtcttcgccttccaggccgtcctctcggccgccgcctcggcgctccacctcgcggcgtcc
ccgcgcggccgccgccacccgcacctcggcgtccccgccggcctcctcctcgcgctccac
ccgctcctcgcctgcgccgccacggggctcctcgcgctggcgctcctcctcaccgcgtcc
ccgcgcccgcgccagcccccgctgcagcggcgcgcgctcgcgaccgccctcctcgccgcg
gccggcgcgctctccgtgggcgccgccgcggcgattctccccgaggacgccgggtgggcg
gcggtcgctgggctcgggttccgcggggccgtgctgggtgccgtcttcgccgcgcactac
tttggccgtgggaggtggttgctccagttccccgtcgtgcagcgacctctattctatgga
ttgaagatggggcttctgccatctggaaaaagggccctgaaagtgtcgcttcaggccttc
tgcctttcctttgtcctgattttactccttcctcagcaattcagaattggaggctctatt
ggaagccaaatacttactcagatcagcatctttatagtcacaactggggtttccttctgt
ttggaaataagccatcattttgtccaggttgtacatacaaggaggtgcaattttgctcca
cctcagagcactgccgctgcagagactaatcccacagaatttatcctggaaacattggaa
caaagtgatccacggtcattaatacaatatcttgcttaccaagatttgtgtgtggtatct
gagtctaacttggaaccttggcgccgaggtgccttctttgaggaatctggtgaaacttat
aaaagaattgtgacagcttgtttgaaaccacttgaggagtttacttcaataattgctaga
gcccttgaagagtattcgacagaatcattgtcacaacagtccttactcttcagtgcattt
gatgattctcagatatgcacatggtgtgctcggacattggcaggattaactgcacgctca
caccaggaggaccgttatggagttgctcaactcactggctgcaatgctgccgtgatgacc
acgttactgtctgctctattggcaattgaggcatgtttagggaagaaaatgaacccacag
cccgcactgggtcctgaaaacattaagtgggctaacttgtccacaggacgaaaaggatct
ggaattgcaattgcaactacgcaaaaaggtggtttgcacaagaaagtttatgccatggct
gatgttcttcggacttcagtttatcagatagtttcagcattcattgatgacctgcgagca
aatgcaaaaccagcaagtttggagaagaattggatcagtgaagggaggaagccaatatat
ggttcgcaagcaatgttggtacagaagttgggtttgtttatcgagtaccgtgctgtctga
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