Panicum virgatum (switchgrass): 120712943
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Entry
120712943 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 45-like
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120712943
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120712943
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120712943
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120712943
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120712943
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120712943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
120712943
NCBI-ProteinID:
XP_039854815
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All DBs
Position
6K:complement(44846518..44867512)
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AA seq
882 aa
AA seq
DB search
MGDTRPRAWEAGESSRDAKTPRLDLLASAALGQNDLSGWDEWPEVTGDNDRCDHVPTDSA
HKEILDSSLLSDDAGKCADCQREEEPGKCRPVNSRILVCLGCGRQSCGDSENYLPYGHAQ
DHAKHEQHWVAAMFADPQAGFCFKCGTEVSVYPEPDEMSGEIQAGGHAFGFDAHSGPVNG
LLNIGYTWQGHEFGSANVQGYAIRGIPNRGSTCYVNAIVQCLLVLDKLRARMLGPDAPPG
QLGLALMELFVETCVEDAVVGMLNPDKLLRRVRLHTDRFEAYRMHDSHELLDSLRSALHS
EENEIETPNRQSGAGTVIDSIFRGEISYTRSCICCGSSLVLRDQFCELSLPLPSKEHPSR
SAAAPQTSESLKSEPKKAAAQLIPANEKSTSEKIQEVAKSGDSHILGSELKDVVVEKTPE
PLEVDSCEAQCIWQSKDVLQDPLETVEDKVSCSELSRGIIEAPPKSVSFVPQSLSSVKVE
QVIEMTADSHSPEDMVPLPLIAPLSENGAPMALGSSVDQNGNADPGDLLNQLEVSIQAKE
NTYTGQLTAEHKGNARSRDAVHDKVVGVSNIVPSIEDCLSLFFKEQVVTRNCDDCPKVIE
EPSTNQSENGGQMMASTTDSTAVDGNLTEQSDRLTCQIGQSIEPSSVECKSSSSRQPDDS
DAKSEIIQTEEAVTERISSGMSYGDKEIECHEGIQEAVSSCLPAEKQTDLLSSEHSQNLS
TPNQDKSKRVGVDLSASQLGDSQNEQKERSGCAIETPCITKLPSVLTLHLKRYIKCGNAH
HKNEAHVSYKEYLDVQRFMDPSSVDKDKSLYQLAGVVEHCGPSMNAGHYVAYVRARRLGN
HEQQSTCSSSWFCADDGHIRYVTLEDVLKREAYILFYEKMEG
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacgaggccgagggcgtgggaggcgggcgagagctcgcgggatgccaagact
ccgcggctggacttgctggcttcggcggcgttggggcagaacgatctgtcgggctgggac
gaatggccggaggtgaccggcgacaatgatcggtgcgatcacgtccccactgacagtgct
cacaaggagattctggattcatctctgctatccgatgacgcagggaagtgtgcggattgc
cagcgcgaggaggagcctggtaaatgccggcctgtgaatagccgaatcttggtgtgcctg
ggatgcggccggcaatcctgcggggattcagagaattatctcccatatgggcatgctcag
gatcacgccaagcatgagcagcattgggttgctgcgatgttcgctgatccacaagctgga
ttctgcttcaagtgtggaactgaagtgtctgtgtatccagagccggatgaaatgtcaggc
gaaattcaggcaggtggtcatgcgtttggatttgatgcgcactccggtcctgtcaatgga
ttactgaatatcgggtacacatggcaaggccatgagttcggatcagctaatgtgcaaggc
tatgctatcagagggataccgaatcgcgggagcacctgctacgtgaatgcaatagtgcag
tgcctccttgtgcttgataagctgcgggcaaggatgttaggaccggatgctccgccaggt
caacttggactagcactgatggagctttttgtggagacatgtgtggaagatgctgtggta
ggcatgctgaacccagataaactcttgagaagggtacgcttgcatactgacaggttcgaa
gcctatagaatgcacgacagccatgaactgcttgactccttgcgtagtgctttgcatagc
gaggaaaatgaaattgagactcctaacaggcaaagcggtgctggtacagtaattgattcc
attttcaggggtgaaatctcttatacacggtcctgcatttgttgtggatctagtctggtt
ttacgcgatcagttctgtgagctctcactgcccctgccatcaaaggagcatccatccaga
agtgctgcagcaccacaaacaagcgagtctctcaaatctgaaccaaagaaagctgctgca
caactaattccagcaaatgagaagagtacctcggaaaaaatccaagaagttgccaaaagc
ggtgattctcatattcttggttcagaattgaaagatgtcgtcgtggagaaaacacctgag
cctttggaagttgattcttgtgaagcgcaatgtatctggcaaagcaaggatgttctacag
gatcctttggagactgtggaggataaagtctcatgttctgaactttcacgagggatcatt
gaagcgccaccaaaatctgttagttttgttccgcagagcttgtctagtgtcaaagttgag
caagtgattgagatgacagcagattcccacagtccagaagatatggttccacttccactt
attgctccactaagtgaaaacggtgcaccaatggcattaggcagttctgtagatcaaaat
ggaaatgctgatcctggcgatctattgaatcagctggaagttagtatacaagccaaggag
aacacttacacaggacaattaactgcagaacacaaaggaaatgctcggagtagagatgct
gtacatgataaggtggtaggggttagcaatattgtaccatcaattgaggactgtctatca
ctgttttttaaagaacaggtagtaacacggaattgtgatgattgtcccaaggttattgag
gagccaagtaccaaccaaagcgaaaatggtgggcagatgatggcaagtaccactgatagc
acagcagttgatgggaatctgactgaacagtcagacaggttaacatgccaaattgggcaa
tctattgagccttcgtcagtagaatgcaaatcttcttcaagtaggcaaccagatgattct
gatgcaaagagtgaaattatacaaacagaagaagctgttacagaaagaataagttctggg
atgagttatggtgataaagaaattgaatgtcatgaaggtattcaagaagctgtaagtagt
tgccttccagctgagaaacagaccgatctgttgagctctgagcatagtcaaaatcttagc
acgccaaatcaggacaagagtaagcgagtcggggtggatcttagtgcaagccagttagga
gatagccaaaacgaacagaaagagaggagtggatgtgctattgaaacaccttgtattacc
aagctgccatctgtattaactcttcatcttaagaggtacatcaagtgtggcaatgcccat
cataaaaatgaagcacatgtgagctataaggagtaccttgatgtacagcgattcatggac
cccagctccgtggacaaagataaatctttgtatcagctagctggtgtagtggagcactgt
ggaccgtccatgaatgccggacactatgttgcttacgtaagagcaaggaggcttggaaat
catgaacagcagagcacctgctcttcctcatggttttgtgcggacgatggtcacatcaga
tatgtcactctagaagatgttctcaagcgtgaggcatacattcttttctatgagaagatg
gaaggctaa
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