Panicum virgatum (switchgrass): 120712992
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Entry
120712992 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ATL4-like
KO
K10663
E3 ubiquitin-protein ligase ATL4 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120712992
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120712992
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120712992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-C3HC4_3
zf-RING_Vps41
zf-RING-like
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
120712992
NCBI-ProteinID:
XP_039854882
LinkDB
All DBs
Position
1K:46713252..46714951
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AA seq
387 aa
AA seq
DB search
MVMDALSPPAAGDPFAATLPPSLPSPPPPSSSSPSLNLSPSLLIIAALLAFVFCASVSIH
FLLRCLARASSHPSPSPFPARARRASGAEAEEVGAGSARRSAAAVGPEEAHPAEAAVDDE
KERLIASLPLFTMASALAALPKSSPDCAVCLSPFSPDAELRLLPACRHAFHAACIDAWLR
TTPSCPLCRAAVSLPHPPLPTAAPAAAGPGAQEPLDARVGSSNSNSRSFRVEIGSVSNRR
SSAAGDDRRTYSLGSFDYRVDEEVEAVVSRITRPAVSAAAKSATHEAAPATPGEALAEAA
GSRGWLREYVDRLASSASSLSGRWSARWSQGHQSARWSQGHGHHSRSQSQSHRPDDSWRW
DPEAAMHRAPDEEEPGFVALYRWIVGV
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggtcatggacgccctctcgccgcccgccgccggcgacccgttcgcggccaccctcccg
ccgtcattgccgtcgccgcccccgccgtcctcgtcgtcgccgtcgctcaacctctccccc
tcgctgctcatcatcgccgcgctgctggcgttcgtcttctgcgcctccgtgtcgatccac
ttcctcctccgctgcctcgcccgcgcgtcgtcgcacccgtccccgagcccgttcccggcc
agggcgcgccgcgcgtccggggcggaggcggaggaggtgggggcggggtccgcgaggagg
agcgccgcggcggtggggccggaggaggcgcatcccgcggaggcggcggtggacgacgag
aaggagcggctgatcgcgtcgctgccgctgttcaccatggcgtcggcgctggcggcgctg
cccaagagctccccggactgcgccgtctgcctctcgcccttctcccccgacgccgagctg
cggctgctcccggcgtgccgccacgcgttccacgccgcctgcatcgacgcctggctccgc
accaccccgtcgtgcccgctctgccgcgccgccgtctcgctcccgcacccgccgctcccc
accgcggcgcccgccgccgcggggccgggcgcgcaggagccgctcgacgcgcgggtcggc
agcagcaacagcaactcgaggagcttccgcgtggagatcggcagcgtgagcaaccgccgc
tcctccgccgcgggcgacgaccgccgcacctactcgctcggctccttcgactaccgcgtc
gacgaggaggtggaggccgtggtgtcccgcatcacccgccccgcggtgtcggcggcggcc
aagtcggcgacccacgaggccgcgccggcgacccccggcgaggcgctggcggaggcggcg
gggtcccgcgggtggctgcgcgagtacgtcgaccgcctcgcctcctcggcatcgtccctc
tccgggcggtggagcgcgcggtggagccaggggcaccagagcgcgcggtggagccagggc
cacggccaccacagccgcagccagagccagagccaccggcccgacgactcgtggcggtgg
gaccccgaggcggcgatgcaccgcgcgccggacgaggaggagcccgggttcgtggccctg
taccgttggatcgtcggggtatag
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