Panicum virgatum (switchgrass): 120713048
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Entry
120713048 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120713048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120713048
03036 Chromosome and associated proteins [BR:
pvir03036
]
120713048
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120713048
Coactivators
SAGA/TFTC/STAGA complex
120713048
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120713048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Motif
Other DBs
NCBI-GeneID:
120713048
NCBI-ProteinID:
XP_039854954
LinkDB
All DBs
Position
6K:complement(46329981..46339878)
Genome browser
AA seq
771 aa
AA seq
DB search
MSEATDAQLQATEQEVSVHASQQAGQPHMNATDQFSRSELVTEGSKSEQPVQVEQQNPQL
QQFQPENRLQQAETNCFQLAEKETGSFGQQSFSGSKVDVAQPSVAQQSAKQVVGLQAPSG
AQDTRKGPSIPFNMLIPILQAHLDRDKDMQLQTVWSKLRRNEVHKDDFLRVIRNIVGDQM
LKQAAHKVFQQMQAQAQRNNQANPSQHSLFSQASAQQMPSSGSAQLHDQKVRPPGPSNQG
QKTQVSSSPQAFAPQPGTQAQTSAQYLSHDNPNQNPDAKVPNAISNQPPRMNSAVSLQTK
NKQQQPTQFQQASQQIYGASNPGAQGYPRSITGSLRPPNPVPETHAHGMPPAKVAPPPTH
PMMQHNAVAWQMHQNKELKTNTPPPNANAKQNSESAGKARTVGAGNSSAKGKQGPPNSST
PNASGGAKSNKKSGGQKKSSEAAGSTQPSSKKQKTSGAFQEQSIDQLNDVTAVSGVNIRE
EEEQLLSAPKEESLASQEARRIAQEEEENLFLRKGPLLKKLVEIARKCNLKNVNVDVEHC
LSMCVEERLRRFISTLIRVSKQRIDTEKTGHRLVITSDVGRQILQMNQKAKEEWDKKQAE
EADKNKKQTEADGSGAAELEKEKEESRPKNVKPNKEEDDKMRTNAANVAARQAVGGSDML
SKWQLMAEQARQKREGLDVAAASQQGKGPGPRPLSKFGKGLGENQEGSKRSHSAAFGTGG
MKRPGRTPFAGPQRTISVKDVICALEREPQMTKSRLIYRLHERLPGDSSAD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagctacagatgctcagctgcaagcaacagagcaggaagtaagtgtccatgca
agtcaacaagcagggcaaccgcatatgaacgcaacagatcaattctccagatcagaatta
gtaactgaaggttcaaaaagtgaacaacctgtccaagtggagcaacagaatccacagcta
caacaatttcagccagaaaatcgactgcaacaagctgaaacaaattgcttccagttagct
gagaaagaaacagggagttttggtcagcagagtttttcaggttccaaggttgatgtagct
cagccctcagtagctcagcagagtgcaaagcaagttgttggcctgcaagcaccatctggt
gcccaggatacaaggaaagggccatctataccattcaatatgttaattcctatcctacag
gcacatcttgacagagacaaagatatgcaacttcaaaccgtatggtcaaaacttaggcgc
aatgaagtccacaaagatgatttcttaagagtgatcaggaatattgttggggatcaaatg
ctcaagcaggcagcccataaagtttttcaacagatgcaagcccaggcacaaagaaataac
caggcaaatccaagtcagcattctttattctctcaagcgtcagcacagcagatgccttcc
agtggttcagcacagttacatgatcagaaagttcgtccacctggaccatccaaccagggt
cagaaaactcaggtgtcatcttcacctcaggcttttgcaccacagccaggcactcaagcg
caaactagcgcacaatatctttctcatgataaccccaaccaaaaccctgacgcaaaggta
ccaaatgctatatcgaatcaaccacctagaatgaactcagcagtttcattgcaaacaaag
aacaagcagcaacaacccacacaatttcagcaggcctcacagcaaatatatggagcaagt
aatcccggtgcccagggttaccctcggtcaatcactggttctcttaggccaccaaatcca
gttccagaaacacatgctcatggaatgcctcctgcaaaagttgcccctccccctactcat
ccaatgatgcagcacaatgcagttgcatggcaaatgcatcaaaacaaggagttgaaaacc
aatactccccctccaaatgctaatgcaaagcaaaattctgaatctgctggcaaggcccgc
acggttggcgcaggaaattcttcagctaaaggaaagcagggacccccaaactcatccaca
ccaaatgctagcggaggtgcgaagagtaataagaaatcgggtgggcagaagaaatcatca
gaagcagcaggctctacgcagccttcaagcaaaaagcagaagacatctggtgccttccag
gaacaaagcattgatcaacttaatgatgtcactgctgttagtggtgttaatattagggag
gaggaggaacagctactctctgccccaaaggaagagagccttgcctcacaagaagcaaga
agaattgcacaggaagaagaagaaaatcttttcctacggaagggcccactcctgaagaaa
ctagtagaaatagctcggaaatgcaatctgaagaatgttaatgttgatgttgagcattgt
ttatcaatgtgtgtggaggagcgattgcgaagattcataagtactcttatacgagtctca
aaacagagaatcgacactgagaagaccgggcatcgactagttattacttcagatgttggc
cgtcaaattttgcaaatgaaccagaaagctaaggaagagtgggataaaaaacaagcagaa
gaagctgacaagaacaagaagcaaactgaggctgatggcagtggcgcggcagagttggaa
aaggaaaaagaggaaagtcgcccaaagaatgtgaagcccaacaaggaagaagatgataag
atgagaacgaatgcggcgaacgttgctgctcggcaagcagttggaggaagtgatatgctc
tcgaagtggcagctgatggctgaacaagccaggcagaagcgagaaggccttgatgtggct
gctgcctcgcagcaaggtaaaggaccaggtcccaggccattatccaaattcggaaaaggc
ctcggcgaaaaccaggaaggttcaaagaggagccattctgcagcgttcggaactggtggc
atgaaaagacctgggaggacgccatttgcgggaccgcaacggacgatctctgtgaaggat
gtgatctgtgccctggagcgggaacctcagatgacgaaatcacggctcatctaccggctg
cacgagcggttgcccggtgattctagcgcagattag
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