Panicum virgatum (switchgrass): 120713166
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Entry
120713166 CDS
T07260
Name
(RefSeq) ABC transporter B family member 10-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120713166
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120713166
04147 Exosome [BR:
pvir04147
]
120713166
04090 CD molecules [BR:
pvir04090
]
120713166
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120713166
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120713166
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120713166
CD molecules [BR:
pvir04090
]
Proteins
120713166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
SMC_N
AAA_22
ABC_ATPase
AAA_16
AAA_29
Zeta_toxin
RsgA_GTPase
AAA_21
AAA_25
DUF87
PRK
Rad17
Motif
Other DBs
NCBI-GeneID:
120713166
NCBI-ProteinID:
XP_039855106
LinkDB
All DBs
Position
6K:5593330..5603843
Genome browser
AA seq
1110 aa
AA seq
DB search
MARMRMSYLRSVLSQDIGAFDTDLTTANIIAGATNHMNVIQDAIGEKVGMLSVLVVPMLL
MVGATYAKMMIDMSLERISFVSEATTVVQQTLENIKTVFSFVGENSAIKSFHKCMYNQYR
LSKKEAMAKGLGLGMLQIATFCSYSLVIWVGAIAVTGGKAKAGETIAAVINVLSGAIYIS
NAAPDLQVFSQAKTAGKEIFKVIKRNPAISYESNGRILENIKGDIEMREVHFAYPSREDK
PVLQGFSLAIQAGNIVALVGSSGCGKSTVISLVQRFYDPITGTVLIDNKNIKELDLKSLR
RNIGSVFQEPSLFSGTIMDNLRIGKMDATDEEIIEAAKTANVHSFISKLPNQYATEVGER
GVQLSGGQKQRIAIARAILKDPPILLLDEATSALDSESEKIVQEAIDRAMQGRTVILIAH
RMSTIINADKIVLVESGIVEHSGTHEELLEKSAFYSSVCSMQNLEKDSGRSETRFTGQVK
EENEEAAEYGTYNTPSFTSSEQKKKLDLTEQPKQAIRKRTSTFYRIFLGTFKLLPGKVLL
GSTAAAISGISRPIFAFYIMTVAMAYLEPDTKRTVSKYSIILFLIGLLTFFSNIFQHYIY
GLVGEWAANNLREALFSVILRNEIGWFEQPKNSVGFLTSRIVGDTSMIKTIISDRMSLIV
QCISSILIATGLSTVVNWRMGLVAWTLMPFHFIAGLVQVRSAKGFATDFTTSHKKLISLT
SEAVSNIRTVASFVQEDEILRKADLSLQEPMRKSRMESIKYGAVQGTALFLWHTTHAIAL
SFTIMLLDKDLATFKNCVRSYQAFAMTISSITELWSLIPMVLSAIAILDPALDILDRETQ
IVPDVPKVHSEERLAGDVGFQDISFSYPSRPEVIILDGFNLAIEPGERVALVGSSGSGKS
TVLALLLRFYDPCEGQVLVDGKDIRDYNLRYLRKHIGLVQQEPILFNTSIRENISYGNED
VSESEIIEAAMEANIHEFISGLSNGYDTVVGDKGSQLSGGQKQRIAIARTILKRPTILLL
DEATSALDSESERVVMSSLGAKEWKNKGEQSRKITSITIAHRISTVTSADVIVVMDKGQV
VEMGSHASLFSASNGVYSKLYHMHSKGVKD
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcatgcggatgtcttatctgagatcagtgctcagtcaagatattggagctttc
gacactgatttgaccactgcgaacatcatagctggagcaaccaaccacatgaatgtaata
caagatgcaattggtgaaaaggttggtatgctctctgtgctagttgtgcctatgctcctc
atggttggagcaacatatgcaaagatgatgattgacatgtccctcgaaagaatatcgttc
gtctctgaagcaaccactgttgtgcaacagactcttgaaaatataaagactgtcttctca
tttgttggagaaaactcagctatcaaatccttccacaagtgcatgtacaatcaatatagg
cttagcaagaaagaggcgatggcaaaaggtctaggtttaggaatgttgcagattgcaaca
ttctgttcatattcattggtaatctgggttggagcaattgctgtaactggaggaaaagca
aaagctggtgaaacgattgcggctgtcattaatgtcctctcgggtgcaatatatatatca
aatgcagcaccagatcttcaggtcttcagccaagcaaaaactgctgggaaagaaatattt
aaagttatcaaaagaaatccagcaataagttatgaatcaaatggaagaatcttggaaaat
atcaaaggagatatagaaatgcgagaggtgcacttcgcgtatccatctcgtgaggataag
ccagttctccaaggtttctcactggctatacaggcaggcaatattgtagctcttgtggga
agcagtggatgtgggaagagcacagtgatttctctggtacaaaggttctatgatcccata
acaggtacggttctcattgacaataaaaacattaaagaacttgatctgaaatcgctgcgg
agaaatataggctcagtcttccaagagccatcactattttctgggaccatcatggataac
ttaagaattggcaaaatggatgcaactgatgaagagataattgaagcagcaaagacagct
aatgtgcactcttttatatccaaacttccaaaccaatacgctactgaggtgggagaaaga
ggtgtacaactatcaggaggtcagaaacaaagaatagcaattgcaagggccattctaaaa
gatccaccgattcttcttcttgatgaagcgacaagtgcacttgattctgaatcagagaag
atagttcaggaagctattgacagagctatgcaagggaggacagttatcttgattgcccat
cgaatgtcaacaatcataaatgcagacaaaattgttcttgtggagagtggaatagtagaa
cattctggaacacatgaagaattactggagaaaagtgcattctactcaagtgtatgcagt
atgcaaaatctagagaaggattctgggaggagcgagacaagatttactggtcaggtcaaa
gaagaaaatgaagaagcagcagaatatggaacatacaacacaccatctttcacttcaagt
gaacagaagaaaaaactagacctcacagaacaaccaaagcaagcaatcagaaagagaaca
tccactttctacagaatattccttgggacttttaaactgctcccagggaaggttctgctg
ggctccacagcagcagcaatatctgggatctcaaggcctatatttgctttctacatcatg
acagttgccatggcatacctggaaccagacacaaagaggacagtcagcaagtactcgata
attttgttccttatcgggttgctcacatttttcagtaatatcttccagcactatatatat
ggcctggttggtgaatgggcagctaataacctaagggaggccctcttttcagtcattctt
cggaatgaaataggttggtttgaacaaccaaagaacagcgtcggctttctaacctcacgc
atcgtcggtgacacctccatgattaaaaccatcatatctgatcgtatgtctctcattgtt
caatgtatctcctcaattttgatagccacaggattgagcacagtagtgaactggaggatg
ggtctagttgcatggactttgatgccattccacttcattgctggccttgtacaagtcagg
tcagcaaaaggttttgccactgacttcactacatctcacaagaagctgatttccctaact
tcagaggctgtcagcaacattcgaaccgtggcatcatttgttcaggaagatgaaatacta
aggaaagcagatttatcactccaagaaccaatgcggaaaagcaggatggagagcatcaaa
tacggtgcagtacaagggactgccctcttcttgtggcatacgacacatgccatcgcactg
agtttcaccattatgctacttgacaaagacctagcaacatttaaaaattgtgtgagatca
tatcaggcatttgcaatgacaatatcttccatcacagagctatggtccttgatccctatg
gtcttgtcagccattgcaatattggatcctgcgcttgacatactcgacagagaaacacag
attgtgcctgatgtaccaaaagtgcactctgaagaaagattagcaggtgatgtagggttt
caagatatcagttttagctatccctcaagaccagaagtgatcatactagatggcttcaat
ctagctattgaaccaggagaaagggttgcattggtcggctcaagtggttcaggaaaatcc
acggtgctggctcttctgctaagattctatgatccttgtgaaggacaagtactcgtggat
ggtaaggacatccgagactacaatttgaggtacctgagaaagcacatcggactagttcag
caagagcccatcttgtttaacacgtctatacgagagaacatcagttatggaaatgaagat
gtgtcggagtcagaaataattgaggctgcaatggaagcaaacatccatgaattcatcagt
ggcctgtcaaatgggtatgacacggtagttggggacaaaggaagccagctttctggaggt
cagaagcagaggattgccattgcaagaactatactaaagaggcccaccatactgctacta
gatgaggcgacaagtgctctagatagtgaatctgagagggtggtgatgagttcccttggc
gcaaaagagtggaaaaacaaaggggaacagtcaagaaagattacaagtatcacgattgca
catagaatatccacagttacaagtgcagatgtgattgttgtgatggataaaggtcaggtg
gtcgagatgggcagccatgcatcattattctcggcaagcaatggtgtttactccaaactg
taccatatgcatagcaaaggagtgaaagactga
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