Panicum virgatum (switchgrass): 120713345
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Entry
120713345 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 17-like protein B isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120713345
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120713345
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120713345
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120713345
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120713345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
120713345
NCBI-ProteinID:
XP_039855265
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All DBs
Position
1K:46930702..46936379
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AA seq
745 aa
AA seq
DB search
MAEQDGAAGQSPLDSAPGVSAENGDENTEQRQPFFSMCKPIRSASYSNSWESICAPAANE
NDHNSGLNSMVNDHILITSASLGSEHTQPEGISGTVDGNGKSRSPHPINKEASLVEDAME
IELSVDEIDVPHGETSEQPEPLSTERPDSADGWNLWDDKDNQKMFPLNSDQYNSNIGETG
DAEDKQFPLSFSYRRQPQSVGAGLSNMGNTCFLNATLQCITHTVPLFLKLRSTDHSTPCS
HNKDGFCSFCALKEHVDESIRRSGSIIMPAKFRDNLRKLSSDFRPGQQEDAHEFLRCLLD
NLHRCTLDPMSKGKSSSFDEESIVKEIFGGQLKSQLSCCECGHSSETFEPFLDLSLEIDQ
VDCLEDALESFTKVEWIGDSEDKLTCERCNAQVCKNKQLTLHRAPDVIAFHLKRFTTLDN
SVEKIDKHVSYPLEVDLKRFHSNPDTAGELKYDLYGVVVHSGLPNYGHYVCSIRSSPSTW
YLMNDSHVDPITDASELDQEAYILFYVRQGKFPWFCSLLESKDALHAENTRGASPVSVLE
NIDANCSTSGGGSSSNSGDKLQKNEARQLEESEKDETSQYKASFCPEEPSKRSSLGASNI
NNTRDEISPSRPSLQPDAIRCPRSVETTNLDRPCTPLRSKRSFSQNEFGVFEFEDFEDKE
TPLIPDLKFPTKANKTKAASASKAVKGSCIDPNAKRLMSGMPSSRRKGLMDCMLTQQNAN
QVPRSRRCPASDPLDKKKRKLVLQC
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcaggacggcgccgccgggcagagcccgctcgactccgctccgggggttagt
gctgaaaatggggatgagaatactgagcagcgtcaaccatttttctccatgtgcaagcca
attcgctctgctagctactcaaattcgtgggaaagcatttgtgctcctgccgccaatgaa
aatgaccacaatagtggcctgaactcaatggtgaatgaccacatcctgatcacatctgct
tctcttggaagtgagcacactcaacctgagggcatatctggtactgtagatgggaacggc
aagtcgcgttcaccgcatccaatcaataaggaagccagtttggtagaagatgccatggaa
attgaactatcagttgatgaaattgatgtgccacacggagaaacaagtgagcagccagaa
ccccttagcacagaacggcccgattcagctgatggatggaatttatgggatgacaaagat
aatcaaaaaatgtttcccctcaacagcgatcagtacaactccaatattggagaaactggt
gacgctgaagataagcagtttcctttgtccttttcttacagaaggcaaccccaatctgtg
ggagcaggtcttagcaatatgggaaacacatgcttcttaaatgcaactcttcagtgcatc
actcacactgtgccactttttctcaagcttcgctcaactgatcattccactccatgctca
cataataaagatggattctgttctttttgtgcccttaaagaacatgtcgatgaatcaatt
cgaaggtctggatctattataatgcctgcaaagttcagagataatttaagaaagttatct
tctgattttagaccaggacagcaagaggatgcacatgaattcctacgttgcttgcttgat
aacttgcataggtgtacccttgatcccatgtcgaagggcaagagctcatcctttgatgaa
gagagtatagtcaaggagatttttggaggccaactgaaaagccagttgtcttgctgtgag
tgtggtcacagctcggagacatttgagcccttcttggatctaagcttggagatcgatcag
gttgattgcctggaagatgctttggaatcttttaccaaggtagagtggattggggactct
gaagacaagctcacctgtgaaagatgcaatgctcaagtttgtaagaacaagcagcttaca
cttcatagagcaccagatgttattgcatttcatctgaagcgttttaccacccttgacaac
tctgttgagaagatcgacaaacatgtgtcataccctctggaggttgatttgaagcggttc
cacagtaaccctgacactgcaggggagctgaaatacgatctttatggtgttgttgtgcat
tctgggttacccaactatggccattatgtgtgcagtattcgttcttcaccaagcacttgg
tacttgatgaatgactcccatgttgatcctattactgatgcaagtgaattagaccaggaa
gcatatattctcttctatgttaggcagggcaaatttccatggttctgtagtttgctagag
agcaaggatgccctgcatgctgagaatactcgcggtgcatctcctgtgtcagttttggaa
aatattgatgcaaactgttcaacttctggaggaggcagtagcagtaattctggtgataag
ttacagaaaaatgaagccaggcagttagaggagtcagagaaagatgaaaccagtcaatac
aaagcatcattctgtcctgaggagccatctaagagaagttcacttggtgcttccaacatc
aacaacacaagagatgaaatcagtccctcaagaccatctctccaacctgatgccattaga
tgtccccgtagtgtagaaactaccaatctggataggccctgcactcctctgcgctccaag
cgatcgttttctcagaatgagtttggtgtgtttgagtttgaggacttcgaagacaaagag
actcctttgattccagatctgaaatttccaactaaggcgaacaaaactaaggctgcatct
gcatctaaagctgtgaagggctcttgcattgatccgaatgcaaagcgtttgatgagtggc
atgccatcctcaagaagaaaaggtctcatggactgcatgctcacacagcaaaatgcaaat
caggtgcctcgtagtcgcagatgccctgcaagtgaccctctggacaaaaagaaaagaaag
ttggttcttcaatgctag
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