Panicum virgatum (switchgrass): 120713356
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Entry
120713356 CDS
T07260
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120713356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120713356
03036 Chromosome and associated proteins [BR:
pvir03036
]
120713356
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120713356
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120713356
PBAF complex
120713356
GBAF(ncBAF) complex
120713356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Phage_GPA
YEATS
Motif
Other DBs
NCBI-GeneID:
120713356
NCBI-ProteinID:
XP_039855276
LinkDB
All DBs
Position
1K:complement(46957698..46959761)
Genome browser
AA seq
535 aa
AA seq
DB search
MASGGNPNPTGAPPQSRPPHPQQQQPPGGSPATPMTHLRPPSLAGSPFQGVFHTPPSHNP
AFQIHMGASSPQTPLMAAAAAVAAQSAKRPPQKPPARPPAPGSTSAAAAASAAAAYKAAA
AAAAVANSGGVDLTPAARRNKKRKLPEKQLPDRVAALFPESALYTQLLEFEARVDAALAR
KMGDIQEALKTPPSLQRTLRIYVFNTFANQGPRTIPPPKNADPPTWSLKIIGRVLEDGAE
LDPASVVPKHNPVYPKFSQFFKRVTIALDPQLYPENPLIIWENARSAAQQEGFEVKRKGD
KEFVANIRLEMNYNPEKFKLSQPMMEVLGVEVDTRARVIAALWQYIKAKKLQNPNDPSFF
MCDPQLKKVFGEDKLKFAMLSQKISQHLTAPPPINLEHKIKLSGNGASGSACYDVLVDVP
FPLQKEMMAFLANTEKHKDIEACDDVISASIKKIHEHRRRRAFFLGFSQSPVEFINALIA
SQSKDLKLVAGEANRNIDKERRADFYNQPWVEDAVIRYLNRKPANEGPGGGAGGS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcctccggcggcaaccccaaccccaccggcgccccgccccaatcgcgtcccccgcat
ccccagcagcagcagccgccgggcggctccccggcgacgcccatgacccacctccgccca
ccctccctcgccggctccccgttccagggcgtcttccacacgccgccgtcccacaacccc
gccttccagatccacatgggcgcctcctcgccccagaccccgctcatggcggccgccgcc
gctgtcgcggcgcaatcggccaagcgccccccgcagaagccccccgcgcgccccccggct
cccgggtctacctcggccgctgcggcggcttcggcagctgccgcgtacaaggctgctgcg
gcggcggcggccgtggcgaactccggaggtgtcgacctcacccccgccgcgcgacgcaac
aagaaacggaagctcccggagaagcagctgccggaccgcgtcgccgcgctgttcccggag
tcggcgctctacacgcagctgctcgagttcgaggcccgcgtggacgcggcgctggctcgg
aagatgggggacatccaggaggccctcaagacgccgccctcgctccagcgcacgctccgc
atctatgtcttcaacaccttcgccaaccagggcccgcgcaccatcccgccgcccaagaac
gccgacccgcccacctggtcgctcaagatcatcggccgggtgctcgaggatggcgccgag
ctggaccctgccagcgtcgtgcccaagcacaacccggtgtacccgaagttctcccagttc
ttcaagagggtgaccattgcgctggacccacagctgtaccctgaaaacccattgatcatc
tgggaaaatgcgcgttctgccgctcagcaggaagggttcgaggtgaagaggaaaggggat
aaggagtttgttgcgaacatccgcctggagatgaactacaaccctgagaagtttaagctg
tcacagccgatgatggaggtgcttggggttgaggtggacactcgcgcgcgggtgattgct
gccctgtggcagtacatcaaggcgaagaagcttcagaacccaaacgacccttccttcttc
atgtgcgaccctcaattgaagaaggtgtttggggaggataagcttaagtttgcgatgctg
tcacagaagatatcgcagcatctgactgccccaccgccaatcaacttggaacacaagatt
aagctatcaggcaatggagcttctggaagtgcttgctatgatgtgctggtggatgtgccc
ttccccctgcagaaggagatgatggcattccttgccaacacggagaagcacaaggacatt
gaggcctgcgatgatgtgatatccgcctcgatcaagaagatccatgagcaccgcaggagg
agggctttcttcctgggtttcagtcagtccccagtggagttcatcaacgccctgatagct
tctcagagcaaagatttgaagctggtcgctggcgaagcgaataggaacattgataaggaa
agacgtgcagacttctacaaccaaccatgggttgaggatgctgttataagatacctgaat
cgcaagccagctaatgagggcccaggcggtggtgctggtggttcttga
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integrated database retrieval system
