Panicum virgatum (switchgrass): 120713810
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Entry
120713810 CDS
T07260
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic-like isoform X1
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120713810
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120713810
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_6
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2_STOP2_C
Motif
Other DBs
NCBI-GeneID:
120713810
NCBI-ProteinID:
XP_039855718
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Position
6K:complement(47490943..47496828)
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AA seq
532 aa
AA seq
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MAAAHLFGLGDAQTMQPPLPQQAAPPPPAAAPALKKKRNQPGNPNPDAEVIALSPKTLLA
TNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPKETRRRVYLCPEPSCVHHDPSRA
LGDLTGIKKHYCRKHGEKKWKCDKCNKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDS
FITHRAFCDALAQESARAPPIGAGMYGSGGMALGLSGLAASQLHSFQDQQAHSSAATAIT
GNPAAQFEHLMPSSAGSPAFRGAQPASSSSSPFYLGGAEDGHQSQPGHTSLLHGKPAFHG
LMQLPEQHGQPGSNGLLNLGFFSGASSGQDARLVFPDQFNGAAGGNGRGDGGEHGNSGAN
TESAAIFSGNNLMGNQMGVGGGGGFSSSLYNSTETVAPPQMSATALLQKAAQMGATTSGA
GGGSVNSLLRGLGSGGALNGRPAGAAGFMAGESSSSRSTCQAENESQFRDLMNSLAASGS
GGFPGMDDGKLSTRDFLGVGGGVVRSMGGAVGLPLRHGAAGIGMGSLDPEMK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcccacctgttcggactcggcgacgcgcagacgatgcagccgccgctgccg
cagcaggcagcgcctcctcctccggcggccgcgccggcgctcaagaagaagaggaaccag
cccggtaacccaaatcccgacgcggaggtgatcgctctgtccccgaagacgctgctggcg
acgaaccggttcgtgtgcgaggtgtgcaacaaggggttccagcgggagcagaacctgcag
ctgcaccggcgcgggcacaacctgccgtggaagctcaagcagaagaaccccaaggagacg
cggcggcgggtgtacctgtgcccggagccgtcgtgcgtccaccacgacccctcgcgggcg
ctcggcgacctcaccggcatcaagaagcactactgccgcaagcacggcgagaagaagtgg
aagtgcgacaagtgtaacaagcgttacgccgtgcagtccgactggaaggcgcactccaag
acctgcggcacgcgcgagtaccgatgcgactgcggcaccctcttctctaggagagacagc
ttcatcacccaccgtgcgttctgcgacgcgctggcgcaggagagtgcacgggcgccgccg
atcggcgcgggcatgtacggctccggcggcatggccctcggcctctccgggctggccgcc
tctcagctgcattccttccaagaccagcaagcccactcgtcggccgccaccgccatcacc
ggcaatccggctgcgcagttcgaacacctcatgccgtcctcggccggctccccagcgttc
cgcggcgcgcagccggcgtcgtcctcctcctcgcctttctacctcggcggcgcagaggac
ggccaccagagccaaccgggacacacctcgctgctccacggcaagccggccttccacggc
ctgatgcagctgccggagcagcacggccagccggggagcaacggcctcctaaacctgggc
ttcttctcgggcgcgagcagcggccaggacgcgcgcctcgtcttcccggaccagttcaac
ggtgccgcaggcgggaacggccgcggcgatggcggcgagcatggcaacagcggcgccaac
accgagtccgcggccatcttctccgggaacaacctaatgggcaaccaaatgggagtcggc
ggcggcggcggcttctcttcatccttgtacaactcaaccgagaccgtcgcgccgccgcag
atgtcggcgacggcgctgttacagaaggccgcgcagatgggcgcgacgacgagcggcgcc
ggaggcggcagcgtgaattctctgctcaggggcctcggtagcggcggcgccttgaacggg
agaccagccggtgctgctgggttcatggccggcgagagctcgtcgtcgaggagcacttgt
caggccgagaacgagagccagttccgggacctgatgaactctctggcggcttccgggagc
ggtggcttccccggcatggacgacgggaagctgagcacgagagacttccttggcgtcggc
ggcggcgtcgtgcggagcatgggcggcgcggtggggcttccgctgcggcacggagccgcg
ggcattggcatgggctcattggacccagaaatgaagtag
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