Panicum virgatum (switchgrass): 120713831
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Entry
120713831 CDS
T07260
Name
(RefSeq) peptidyl-prolyl cis-trans isomerase CYP71-like
KO
K12736
peptidylprolyl isomerase domain and WD repeat-containing protein 1 [EC:
5.2.1.8
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120713831
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120713831
Enzymes [BR:
pvir01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
120713831
Spliceosome [BR:
pvir03041
]
Complex C
Other components
PPlases
120713831
Chaperones and folding catalysts [BR:
pvir03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
120713831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pro_isomerase
WD40
WD40_Prp19
WDR55
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
120713831
NCBI-ProteinID:
XP_039855747
LinkDB
All DBs
Position
6K:47680656..47686461
Genome browser
AA seq
648 aa
AA seq
DB search
MASESETTAVSTITSATVDDGGAHESKRELGSGAATSPGVGQEEDEEMIGPGPAPAKQRK
KRPLQFEQAFLDALPSAAMYEKSYMHRDVVTHVAVSPADFFITGSADGHLKFWKKKPVGI
EFAKHFRSHLSPIEGLAVSVDGLLCCTISSDRSVKIYDVVNYDMMFMMRLPFVPGAIEWV
HREGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMRYNHVHDVVISADA
RGLLEYWSPSTLNFPDQEVRFRLKTDTNLFEIVKCKTSVSAIEVSNDGSQFAVTSPDRRI
RVFWFKTGKLRRVYDESLEVAQDLQRSDVPLYHLEAIDFGRRMAVEKEIEKTENVPQPNA
VFDESCNFLIYATLLGIKIVNLHTNKVSRILGKVENNERFLKIALYQGDKGNKKVRKIPS
VAANVNDSKEPLSDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPEELLSV
SDLGKTATTSLPDNLVLHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKG
FMIQTGDPLGDGTGGQSIWGSEFEDEFHKSLRHDRPFTLSMANAGSNTNGSQFFITTVAT
PWLDNKHTVFGRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNVTVPKT
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggagagcgagacgacggcggtctccaccataacaagcgcgacggtcgacgat
ggtggcgcgcacgagagcaagcgggagctcggcagtggcgcggccaccagccccggcgtg
gggcaggaggaggacgaggagatgatagggccgggcccggcgccggcgaagcagcggaag
aagcgcccgctccagttcgagcaggccttcctcgacgccctcccctccgccgccatgtac
gagaagagctatatgcatcgggacgtcgtcacccacgtcgccgtctctccggccgacttc
ttcatcactgggagcgcagatgggcacctcaagttttggaagaagaaacctgttgggatt
gaatttgctaaacattttaggtctcatctcagtcccatcgaaggcctagctgtgagcgtt
gatggattgctttgctgcacgatatccagcgaccgttctgtgaagatatatgatgttgta
aactatgacatgatgttcatgatgcgtctcccatttgttcctggggctattgagtgggtt
catcgagagggggatgtcaaaccaaaacttgctgttagtgaccgaaatacaccttttgtt
cacatatatgatactcattctggttcaaacgatccaatcatctccaaagagattcatgct
ggtcctgttaaagtaatgagatataaccatgtgcatgatgttgtgatatctgctgatgcc
agaggactgttggaatactggtctccatctaccctcaactttccagatcaagaagtgagg
tttcgtctgaaaacagatacaaatttatttgaaattgtaaaatgcaagactagtgtgtct
gctatcgaggtgagcaatgatggcagtcaatttgctgtcacatcccctgatcgcaggata
cgggtattttggtttaaaactggaaaactaagacgtgtatatgatgaatctctagaggtg
gcacaagatcttcaaagaagtgatgttccattgtatcaccttgaggctattgatttcggg
cgccgaatggctgtggagaaggaaatagagaaaacagaaaatgttccacaacctaatgcc
gtctttgatgagagctgcaactttcttatttatgctactcttttgggcataaagattgta
aatttgcacacaaataaggtttcacgcattctggggaaggtagagaacaatgagaggttt
ctgaaaatcgctctataccaaggcgacaaaggcaataagaaggttagaaaaattccttca
gtagctgccaatgtcaatgatagcaaggaacccttatcagacccaacactgctatgctgc
gctttcaagaagcatcgaatatatctctttagtcgtagggaacctgaggaacctgaagat
gcaaccaagggtagagatgtgttcaatgaaaaaccgccaccagaagagcttttgtctgta
tcagatttaggaaaaactgctacgacatcattgcccgataatttggtgctgcatacttct
atgggtgacattcacttgcgactatatccagaagagtgtccaaaaactgtggagaacttc
actacccattgccggaacggttattatgacaatcttatatttcatcgtgtaattaaagga
ttcatgattcagactggggatcctttgggggatggcactggtgggcaatccatctggggc
agtgaattcgaagatgaatttcacaaaagcttgagacatgacaggccttttactctttcc
atggccaatgcgggatctaataccaatggttctcaattctttatcaccactgtggccaca
ccatggctagataacaagcacacagtgtttggtagagttgtgaaagggatggatgttgtc
cagcaaattgagaaggtcaagactgacaagaatgacaaaccatatcaagatgtaaagatc
ttaaatgttacagttcccaagacataa
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