KEGG   Prionailurus viverrinus (fishing cat): 125148628
Entry
125148628         CDS       T09889                                 
Symbol
SEH1L
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
pviv  Prionailurus viverrinus (fishing cat)
Pathway
pviv03013  Nucleocytoplasmic transport
pviv04150  mTOR signaling pathway
pviv05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:pviv00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    125148628 (SEH1L)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    125148628 (SEH1L)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    125148628 (SEH1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pviv03019]
    125148628 (SEH1L)
   04131 Membrane trafficking [BR:pviv04131]
    125148628 (SEH1L)
Messenger RNA biogenesis [BR:pviv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     125148628 (SEH1L)
Membrane trafficking [BR:pviv04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    125148628 (SEH1L)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR35_TULP_N Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 125148628
NCBI-ProteinID: XP_047682606
LinkDB
Position
D3:complement(33100957..33133652)
AA seq 415 aa
MTGKGVGHGAGSRVARAVRAPAAAWSWWAAVRALPRPPSSEVGGADGAGAGPAEAMFVAR
SIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTW
AHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKH
MGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVG
SDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDV
RIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLW
KANYMDNWKCTGILKGNGSPVTGNSQQGNSNPSLGSNIPNLQNSLNGSSSGRKHS
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgacgggcaaaggggtggggcacggcgcggggtcgcgggtggctcgcgctgtgcgcgcc
ccggcggcggcgtggtcctggtgggctgcggtccgcgcgctgccgcggccgccctcttcg
gaggtgggaggggcagacggagcaggcgcgggcccggcggaagccatgtttgtggcgcgc
agtatcgcggcggaccataaggatctcatccatgatgtctctttcgacttccacgggcga
cggatggctacctgctccagtgaccagagcgtcaaggtctgggataaaagtgaaaatggg
gattggcattgtactgctagctggaagacacatagtggatcggtgtggcgtgtgacatgg
gcccatcctgaatttggacaggttttggcttcttgttcttttgaccgaacagctgctgtg
tgggaagaaatagtaggagaatcaaatgataaactgcgaggacagagtcattgggttaag
aggacaactctagtggatagcagaacatccgttaccgatgtgaaatttgctcctaagcat
atgggtcttatgttagcaacctgttcggcagatggtatagtaagaatatatgaggcacca
gatgttatgaatctcagccagtggtctctgcagcatgagatttcatgtaagctaagctgt
agttgtatttcttggaacccttcaagctctcgtgctcattcccccatgatagctgtagga
agtgatgacagtagtccaaatgcaatggccaaggttcagatttttgaatataatgaaaac
accaggaaatatgcaaaagctgaaaccctcatgacagtcacagatcctgtccatgatatt
gcctttgctccaaacttgggaaggtctttccacattctagccatagcaaccaaagatgtg
agaatttttacattaaagcctgtgaggaaagaacttacctcctctggtggaccaacaaaa
tttgaaatccatatagtggctcagtttgataatcataattcccaggtctggcgagtgagt
tggaatataacaggaacagtgttagcatcttcaggagatgatggctgtgtaagattatgg
aaagctaattatatggacaattggaagtgtactggtattttgaaaggtaatgggagccct
gtcactgggaattctcagcagggaaactcaaatccttccctaggttcaaatatcccaaat
cttcaaaattcattaaatggatcttcttctggcagaaagcacagctga

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