Prionailurus viverrinus (fishing cat): 125150909
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Entry
125150909 CDS
T09889
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
pviv
Prionailurus viverrinus (fishing cat)
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pviv03036
]
125150909 (SHOC1)
Chromosome and associated proteins [BR:
pviv03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125150909 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
125150909
NCBI-ProteinID:
XP_047687342
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All DBs
Position
D4:15720377..15807462
Genome browser
AA seq
1501 aa
AA seq
DB search
MFSTFKYCAIDYLYENIVRKKFCRDALLLRVPSCLCQDGNYYAGVIDNKYRRPWMRASAV
SVPGVTDLSVLDQWKASLFVEDFLEKKTITGMVTQINCEFEEVVPSSNPNSQSEVEETSL
YTHEDYTEVFTLVSGLEKYPALQAQNEDFSIDEEIIFVNSLMSYKSQLPTLHTLLSRLKL
YLINDPILDFKGQIFTEANFFRESFSFQGDLKNFVKEDFYMDKENFCQEKLEDTPSILLE
CEFLIPTSLKQEVDIPSLTKLKESLNLMPEIINYVDENEKLFKRDLTTKHGIGIEDIKCS
STEILAIQSYGEPEYNQPVELEMPLTHLCQTDQHSSMSSLTGLQTFPFSPSEKISLLTAE
ESATKYHMVWQLESSLKPFLLTVPRAEEPNSQYSVTDLKKIFSIEEESLVVDPVNPEWWE
KEGLNLMETETLEHLNTYLCHDDLSADDTKMEIFLPTKVLQFESWLEYKSCSSPIALINE
KSTNDRLLLPQKISSLAKEIPDLCFSDDYISVKRPTKEEKPKNDLELVYRISQNKENEDY
LELNCTVPSIESSSSPKIEKSSFKQGRKWKNDLDLLNDFIVLRNKHRTCTSKTELTGSKE
NDEFQDKEEHSLTLQEESPIVCTNKVIEKISQERKVDKVIEIQASDSQCQAFCLLEAAAT
PILKKLVCLCTLPAANWTFATVIFDETRFLLKEQEKVISDAIHQGMNDEREMTYKHAALL
HLLVTIRDVLLTCCLDTALGYLSNAKDIYRSILGSYLDNIWRQLEIVQFVREKKPETNYK
IQELRCQILNWMQSEQQINVLIIIRMDSDGEKHLLIKILNKMEGLTLTVLQNKRNDFLES
EGVLNGTSSCVVAHNQYIGADFPWSNFSFVVEYNFVENSCWTKHCEKLNIPHMAFKVILP
DTVLKRRTLLDSFGGFLLEIQVPYVFFASEGLLNTPEILQLLESNYNITLVERSCSESLK
LFGSTECYVVVTVDEHTAIVLQDLKELNCEKASDNIIMRLMALSFQYSYCWIILYTKKTL
NSEYHLTEKALHHLALIYAALVSFGLKSEELDVKLVLAPGVEEAALIVRQIADHSLMTSK
RDPYEWLDKSWLEVSPSKEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLCQLQELLP
EVPGKVLKHFCSITSLFKISSSSITKSPQIPSPRENRNQASTITSQSSASGSSNSVFQEY
NEYQKSDIGATVHKDTNITSNYNSSLTQLREMPCILSPVTSYNQASYQKDSSCNPNIVHN
PFLINIGSRNMAGNSFQNWNDSESDVFSLDLTQMNCENIISPIDTQKRVAPNFINNQKKG
THVAKGPINKEVCTPNFSLEGSQSPLPWNFKKNVWEQQNHSFNLEYGEKQTTCDKWYSQK
DNLFTTQQKCLSDEVESFLHQSSNAGTKKTFWRELPSVPSMDLFCASDPNVNQKEFSSLY
FHQRAGKCLGQKRHSESSSNSGDKKSLPDLMCSQLPQFKKRRLVYEKVPGRVDGQTRLRF
F
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaacattcaaatattgtgcaatagactatttatatgagaatatagttagaaag
aagttttgcagagatgctttgttgcttcgagtcccttcatgtttatgtcaagatggaaat
tattatgcaggagttattgataataagtataggaggccatggatgagagcttcagctgtt
tcagtgccgggagtgacagatctctcagtcttggatcaatggaaagcaagtctctttgtg
gaggattttcttgagaaaaaaacaatcacaggaatggtgacccagattaactgtgaattt
gaggaagttgttccaagttcaaacccaaactcccaaagtgaagtagaggaaaccagttta
tacacccatgaggactacactgaagtctttacacttgtcagcggtttagaaaaatatcca
gcacttcaagcacagaatgaagatttttctattgatgaagaaataatttttgtaaatagc
ttgatgtcctataaaagtcagctaccaactttgcatactctgttgagtaggctaaaacta
tatttgataaatgaccccattttagatttcaaaggacagatcttcacagaagctaatttc
ttcagggaatctttctcttttcaaggagatttgaaaaattttgtgaaagaagatttttac
atggataaagaaaacttttgtcaggaaaaactagaagatacaccatcaattttgcttgag
tgtgaattcttaatacctacaagcctcaaacaagaagttgatattccatcactcaccaaa
ctaaaggaatcgttaaacttaatgccagaaataataaattatgtagatgaaaatgaaaag
cttttcaaaagagatcttactaccaagcatggaattggcattgaggatataaaatgtagc
tccacagagattttggccattcaaagctatggtgaaccggagtacaatcaaccagtcgag
ttagaaatgccactaactcatctatgtcaaacagaccaacattcttccatgagttcatta
acaggacttcagacatttccattttctcctagtgaaaaaattagtttgcttactgctgaa
gaatcagctaccaaataccatatggtgtggcagttagaaagctctttgaaaccatttttg
cttacagtgccaagagctgaagagcccaatagtcaatattcagttacagatttgaaaaag
atattttctattgaagaagaaagccttgtagttgatcctgtaaacccagagtggtgggaa
aaagaaggactaaatctaatggagacagaaactttggaacatctgaatacatatttgtgt
catgatgatctatctgctgatgatactaaaatggagatatttttgcctacaaaagtactt
caatttgagtcatggctagaatataaaagttgttcctcacctattgcacttattaatgag
aaatctacaaatgatcgtttattgctcccacaaaagatttcatctctggcaaaagaaata
ccagacctgtgtttttctgatgactatatatctgttaaaagaccaacaaaagaagaaaaa
ccaaagaatgatctagaattagtttatagaataagccaaaataaagaaaatgaagattac
ttggaacttaactgcacagtaccatctattgaatcatcttcctctccaaaaattgaaaaa
tcatcttttaaacaaggtagaaaatggaagaatgatttggaccttttgaatgactttatt
gtactgcgaaataaacatagaacttgcacctcaaagactgaactcacgggcagtaaagaa
aatgatgaatttcaagataaagaagaacattccttgactcttcaagaagaaagtcccatt
gtttgtactaataaagtcatagagaaaataagtcaggaaaggaaagtagacaaggtcatt
gaaattcaagcatcagatagccagtgccaagcattctgtctcctagaagcagcagctact
cctatcttaaaaaaacttgtatgcctctgtactctccctgctgctaattggacatttgcc
actgtcatttttgatgaaacaagattcctcttaaaggaacaagaaaaagtaataagtgat
gctattcatcaaggtatgaatgatgaaagagaaatgacatacaagcatgctgctctctta
catcttctggtaacaattagagatgtccttttaacatgctgcttggacacagcattggga
tatttgtcaaatgcaaaagatatctacagaagcatcttaggctcctatctggacaacatt
tggagacagctggagattgtacagtttgttagggaaaaaaagcctgaaaccaattacaag
atacaagaactgcgatgccagatactaaattggatgcagagtgaacagcagattaatgtg
ctgattataataagaatggactcagatggtgagaaacatttactcattaaaatccttaac
aaaatggaaggtttaacactgactgtcttacaaaacaaaagaaatgattttctggaatct
gaaggtgttttaaatggtacaagttcctgtgtagttgcacataatcaatatattggagca
gatttcccctggagtaacttctcatttgtggtggaatacaattttgtagaaaactcttgt
tggactaaacactgcgagaaattgaatattcctcacatggcctttaaagtgattcttcca
gacacagtattaaagagaagaaccttgctggatagttttgggggctttcttttggaaatt
caggttccatatgtgttttttgcatctgaaggacttcttaatactccagaaattcttcag
ttgctagaatccaactataatatcacactagtggagagaagctgcagtgagtcactgaaa
ctctttggaagtacagagtgttatgtagtggtgacagttgatgaacacaccgccatagtt
ttgcaggacctaaaagaattgaattgtgagaaggcatcggacaatatcattatgagactg
atggcattatcattccagtacagctattgttggataattttatataccaaaaaaacatta
aactcagagtaccatcttacagaaaaggcacttcatcatctagcactgatttatgcagct
ttggtttcatttgggctaaaatcagaagaactggatgtaaagcttgtacttgccccagga
gtggaagaggctgcactgatagttcgacaaattgctgatcacagtttaatgacctcgaag
agagatccttatgaatggttggataaatcctggcttgaagtttcaccatctaaggaagaa
atgtacttacttgactttccatgtattaacccattggtggctcagctcatgttaaataaa
ggaccatcactgcactggatattattagcaactctttgtcagcttcaggaacttttacct
gaagttccaggaaaagtcttaaagcatttttgtagcatcacttccttattcaagattagt
tcttcttccataacaaaatcacctcaaattccatcacctcgggaaaacaggaatcaggct
agtaccattacctcccagagttcagcttctggctcttcaaactctgtctttcaagaatat
aatgaataccagaaatcagacataggagccacagtgcacaaagacacaaacatcacttca
aactataactcttcccttacgcaactcagagaaatgccatgcattttatcacctgtgact
tcttataatcaggccagctaccagaaagactccagttgtaatcctaatatagtacataat
cctttcctaattaatataggatcaaggaacatggctggtaactcctttcaaaactggaat
gattcagagtcagatgttttttctttggatctaacacaaatgaactgtgaaaatataata
tcaccaattgacactcagaagagagttgcccctaattttataaataatcagaaaaaggga
acacatgttgcaaaaggacctataaataaagaagtatgtacccctaacttttcactggaa
ggctctcaatctcctcttccctggaacttcaagaagaatgtatgggaacaacagaatcac
tcattcaacttagaatatggtgaaaagcagactacatgtgacaaatggtactctcagaaa
gataatttattcactactcagcagaaatgtctttcggatgaggtagaaagcttccttcat
caaagttcaaatgctgggactaaaaagactttctggagagaattaccatctgtccccagt
atggatttattttgcgcttctgatcctaatgtaaatcaaaaagaattcagcagtctttat
ttccaccaaagagccgggaaatgtttaggacagaaaaggcactctgaatcttcatctaac
tcaggagacaaaaaatcattaccagatctcatgtgttcacaactaccacaattcaaaaaa
cgacgtctagtgtatgaaaaagtccctggtagagttgatggacaaactcgtctgaggttt
ttttga
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