Prionailurus viverrinus (fishing cat): 125151183
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Entry
125151183 CDS
T09889
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125151183 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pviv03400
]
125151183 (LIG3)
Enzymes [BR:
pviv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125151183 (LIG3)
DNA repair and recombination proteins [BR:
pviv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
125151183 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
125151183
NCBI-ProteinID:
XP_047687702
LinkDB
All DBs
Position
E1:22500996..22522859
Genome browser
AA seq
1007 aa
AA seq
DB search
MPLDESAHFVCMTLTLKILFLPTLRALGRKELCLFGEQHHWPDRRQFGHWSETELFHGHG
LLQRRKAILSSQKGGLRPRATRLVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKC
KEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEE
LEDNEKEQISQHIADLSSKATSTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSG
FAAKPNNSGEARSSPTPKASLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQD
FLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQG
DVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLLRLSKLTKEDEQQQALQDIASRCTAND
LKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRR
RALSVQASLMTPVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDYFSYFSR
SLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDA
NVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINR
VIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMM
SIFLMGCYDPGSQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYY
PDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATDLPKLKEL
YQLSKERADFTVAAGDEGSSNTGGSSGENEVTSRPASRASPKQPSTSAKKAGGRRSSPDS
RGGSKPTAKPPPVRVGEKRKAPDEPPGQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAF
DGDLVQEFDMASATHVLGSRDENPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgccccttgatgaatctgcgcactttgtctgtatgactttgactttaaagatcctcttc
ctcccaaccctccgcgcactcgggcgaaaagaactctgcctcttcggagaacaacatcac
tggcctgacagaagacagttcggccattggtcagaaacagagctgtttcatgggcacggc
ctcctccagagaagaaaggcaattctgtcatcccagaaaggcggtctaagaccacgtgcc
acccgccttgttttcttgccagggtcgcatgtgggactctgcagtggcccctgtgagatg
gccgagcaacggttctgtgtggactacgccaagcgtggcacggccggctgcaaaaagtgc
aaggaaaagatcgtgaagggcgtatgccggatcggcaaagtggtgcccaaccccttctca
gagtccgggggtgatatgaaagagtggtatcacattaaatgcatgttcgagaaactggag
cgggcccgggccaccacaaaaaaaattgaggacctcaccgagctggaaggctgggaagag
ctggaagataatgagaaggaacagataagccagcacattgcagatttgtcttccaaggca
acaagcacaccaaagaagaaagctgttgtccaggctaagctgacagccactggccaggtg
acgtctccagtgaaaggtgcctcatttgtcaccaataccaatcctcggaaattttctggt
tttgcagccaagcccaacaactctggggaagcccgctcaagccctacccctaaggcaagc
ctgtcctcaagcagatgtgaccccaagcacaaggattgtctgctacgtgagtttcggaag
ttgtgtgccatggtggctgaaaatcctagctacaacacgaagacccagatcatacaggac
ttccttcggaaaggttcagcaggagatggtttccacggtgacgtgtatctaacagtgaag
ctgctgctgccaggtgttattaagagtgtttacaacttgaacgataagcagattgtgaag
cttttcagccgcatttttaactgcaacccagatgatatggcacgagacctagagcagggt
gacgtgtcagagacgatcagagtcttctttgagcagagcaagtctttccctccagctgcc
aagagcctcctcaccatccaagaggtagatgcgttcctccttcgcctctccaagctcacc
aaggaggatgagcaacagcaggccctgcaggacatcgcgtccaggtgtacagccaacgac
cttaagtgcatcatcagattgatcaaacatgacctgaagatgaactcaggtgcaaaacac
gtgttagatgcacttgaccccaatgcctatgaagccttcaaagcctcacgcaacctgcag
gacgtggtggagcgagtcctccgcaatgagcaggaggtggagaaggagccaggccggaga
cgagctctgagtgtccaggcttcactgatgacgccagtgcagcccatgctggccgaggcc
tgcaagtccatcgaacatgcgatgaagaagtgtcctaatggcatgttctctgagatcaag
tatgacggggagcgagtccaggtacataagaacggagactacttcagctacttcagccgc
agcctcaagcctgtcctgcctcacaaggtggcccactttaaggactatatcccccaggct
ttccctgggggccacagcatgatcttggactctgaggtgctcctgatcgacactaagaca
ggcaaaccgttgccctttgggactcttggggtgcacaagaaagctgccttccaggatgct
aacgtctgcctgtttgtttttgattgtatctacttcaatgacatcagcttgatggacagg
cctctgtgtgagcggcggaagtttcttcatgataacatggttgaaattcccaaccggatc
atgttctcagaaatgaagcaagtcactaaagcttcggacttggccgacatgataaaccgg
gtcatccgagaggggttggaagggctggtgctgaaggacgtgaagggtacatatgagcct
ggaaagcggcactggctgaaagtcaagaaagactatttgaatgagggggccatggctgac
acagctgacctggtggtccttggggccttctatgggcaagggagcaaaggtggcatgatg
tccatcttcctcatgggctgctatgacccaggcagccagaagtggtgcacggtcaccaag
tgttcgggaggccatgatgatgcgacgcttgcccgcctgcagaaggaactggacatggtg
aagatcagtaaggatcccagcaagatacccagctggctgaaaatcaacaagatctactac
ccggacttcatagttccagacccaaagaaagctgccgtgtgggagatcacaggggctgag
ttctccaaatctgaggctcacacggccgacggaatctccatccgattccctcgttgcacc
cggatccgtgatgataaggactggaaatctgccactgacctccccaaactcaaggaactg
taccagctgtccaaggagagggcagacttcactgtggcagccggagacgagggaagctcc
aatactgggggtagcagcggagagaacgaggttacctcgcgacctgcctccagggcctcc
ccgaagcagccctccaccagtgccaagaaggcaggaggaaggcggagcagccccgacagc
cgaggtggtagcaagcccacagcgaagcctccccccgtgagagtgggagagaagcggaag
gctcccgacgagcccccaggccaagcaaaggtgctgctggacatcttcactggggtgcgg
ctctacctgccaccctccacgccggacttcagccgtctcagacgctactttgtggcattc
gatggggacctggtgcaggaatttgacatggcttcagccacgcacgtgctggggagcagg
gacgagaaccctgaggcccagcaggtctccccggagtggatctgggcgtgtatccggaaa
cggaggctggtagctccctgctag
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