Prionailurus viverrinus (fishing cat): 125153251
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Entry
125153251 CDS
T09889
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125153251 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pviv03041
]
125153251 (DHX38)
Enzymes [BR:
pviv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125153251 (DHX38)
Spliceosome [BR:
pviv03041
]
Complex C
Other components
Step II factors
125153251 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
125153251
NCBI-ProteinID:
XP_047692184
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All DBs
Position
E2:15550113..15569557
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AA seq
1226 aa
AA seq
DB search
MEDTSEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEEEDSDQAGRHSRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKERSRDRDSDRKRDRDERDRSRHSS
RSERDGGSERSRRNEPESPRHRPKDAATPSRSTWEEEDSGCGSSRRSQWESPSPTPSYRD
SERSHRQSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGE
EGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQK
RISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRI
VFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGV
KKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQEL
LTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEM
GGSLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNT
DVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQE
DYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQ
LPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQ
IYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL
GVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIV
SCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKNN
NYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQA
AKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWL
AELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRS
TKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccagcgaggatgcctcgatccatcgattggaaggcactgatctggactct
caggttggtggtcttatttgtaagactaaaagtgcagccagtgaacagcatgttttcaag
gcccctgccccccgcccttccttgctgggactggacttgttggcttccctgaaacgaagg
gagcgagaggagaaggacgatggagaggacaagaagaagtccagaatctcttcctacaag
gactgggaagagagcaaagatgaccagagagatgctgaggaggaagatagtgaccaagct
ggccgacatagccgaaaagacaggcattatcgatctgctcgggtagagactccatcccat
cctggtggtgtgagtgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gaacatggcgtctatgcctcgtccaaagaagaaaaggatcggaagaaagagagatcacgg
gatcgagactctgaccgcaagagagacagagatgagagggatagaagcagacacagcagc
agatctgagcgggatggagggtcagagcgcagcagaagaaatgaaccagagagcccgaga
caccgacctaaagatgcagctaccccttcaaggtctacctgggaggaagaggacagtggc
tgtggttcctcaaggcgctcgcagtgggaatcgccttccccgacaccttcctatcgagat
tctgagcggagccatcggcagtccagtcgagatcgcgataggtctgtgaggagcaggtac
tcagatgacacacctctgccaaccccatcctacaaatacaacgaatgggccgatgacagg
agacacttggggtccacaccccgtctgtccaggggccgaggaagacgggaggatggcgaa
gaaggaatttcatttgacacagaagaggaacggcagcagtgggaagatgaccagaggcaa
gctgaccgggactggtacatgatggatgagggatacgatgagttccacaaccccctggcc
tactcctctgaggactacgtgaggaggcgggagcagcacctgcataaacagaagcagaag
cgcatttctgctcagcggaggcagatcaatgaggataatgagcgctgggagaccaaccgc
atgctcaccagtggagtggtccatcgtctagaggtggacgaagactttgaggaggacagc
gcagccaaggtgcatctgatggtgcacaacctggttcctcccttccttgacggacgcatc
gtcttcaccaagcagccagagcctgtgattccagtcaaggatgctacttctgacctggcc
attattgcccggaaaggcagtcaaacagtgcggaagcacagggagcagaaggaacgcaaa
aaggctcaacacaaacactgggaactggctggaaccaagctgggagatataatgggtgtc
aaaaaagaggaagagcccgataaagcgctgacagaagacggtaaagtggactataggacg
gagcagaagtttgcggatcacatgaagaaaaagagtgaagctagcagcgaatttgccaaa
aagaagtcgattctggagcagaggcagtacctgcccatctttgctgtgcagcaggagcta
ctcactattatcagagataacagcatcgtgattgtggttggagaaacagggagcggtaag
accacccagctgacacagtacttgcatgaagacggttacacggactacgggatgattggg
tgcacccagcctcggcgtgtggctgccatgtcggtggccaagagagtcagtgaagaaatg
ggaggaagccttggtgaggaggtgggttatgccatccgctttgaagactgcacctcagaa
aacaccttgatcaaatacatgactgacgggatcctgctccgggagtccctccgggaagca
gacttggatcactatagtgccatcatcatggacgaggctcacgagcgctccctcaacact
gatgtgctctttgggctgctgcgggaggtggtggctaggcgctcagacctgaagctcatt
gtcacatcggctactatggatgcagagaaatttgctgcctttttcgggaatgttcccatc
ttccacatccctggtcgtaccttccctgttgacattctcttcagcaagacgccgcaggag
gattatgtggaggccgcggtgaagcagtccttacaggtgcacctgtcgggggcccccggg
gatatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagattgtg
gaacatctggaggaactagagaatgcacctgccttggctgtgctgcccatctactcccag
ctgccttctgatctccaggccaaaattttccagaaggctccagatggagttcggaagtgt
atcgttgccaccaacattgccgagacatctctgactgtcgatggcatcatgtttgttatt
gactctggttattgcaagttaaaggtcttcaaccccaggattggcatggatgctctacag
atctatcccatcagccaggccaatgccaaccagaggtcagggcgagccggcaggacgggc
ccaggtcagtgtttcaggctctacacccagagcgcctacaagaacgagctcctgacgacc
acggtgcccgagatccagaggactaacctggccaacgtggtgctgctgctgaagtccctc
ggggtgcaggacctgctgcagttccacttcatggacccgccccccgaggacaacatgctc
aactccatgtatcagctctggatccttggggccctggacaacacaggtgggctgacctcg
actgggcggctgatggtagagttcccgctggaccccgccctgtccaagatgctcatcgtg
tcctgtgacatgggctgcagctccgagatcctgctcattgtgtccatgctctcggtgcca
gccatcttctacaggcccaagggccgagaggaggagagtgatcaaatccgggagaagttt
gctgtccccgagagtgatcatttgacctacctgaatgtctacctgcagtggaagaataat
aattactccaccatctggtgtaatgatcatttcatccatgccaaggccatgcggaaggtc
cgggaggtgcgggctcagctcaaggacatcatggtacagcagcggatgagcctggcctca
tgtggcactgactgggacatcgtcaggaagtgtatctgtgctgcctatttccaccaggca
gccaagctcaagggaattggggagtatgtgaatatccggacagggatgccctgccacttg
caccccaccagctccctctttggaatgggctacaccccagactacatagtgtatcacgag
ctggtcatgaccaccaaggagtacatgcagtgtgtcactgctgtggatggagagtggctg
gcggagctgggccccatgttctacagcgtcaaacaggcgggaaagtctcggcaggagaac
cgccgacgggccaaagaggaagcctctgccatggaggaagagatggcactggctgaggag
cagctgcgagcccgccggcaggagcaagaaaagcgcagccctctgggcagtgtcaggtct
acaaaaatctacactccaggtcggaaggagcaaggggaacccatgacccctcgccgcacg
ccagcccgctttgggctctga
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