Prionailurus viverrinus (fishing cat): 125154011
Help
Entry
125154011 CDS
T09889
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125154011 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pviv04121
]
125154011 (SLX4)
03400 DNA repair and recombination proteins [BR:
pviv03400
]
125154011 (SLX4)
Ubiquitin system [BR:
pviv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
125154011 (SLX4)
DNA repair and recombination proteins [BR:
pviv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125154011 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
YlbE
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
125154011
NCBI-ProteinID:
XP_047693577
LinkDB
All DBs
Position
E3:38954122..38975511
Genome browser
AA seq
1741 aa
AA seq
DB search
MMDESDDDFKELCATFLQRVKKNGTKEVSGERKTQKASNSTETSKPKRTKPTATKSKTLQ
GPREKKTRSGSQGPRTKRQGAPKWQESKPAPPENGGGGVPASAVLQENVQNTQTEDARDS
DSQPPPSHLTAMGPSPSKPRTAELVLQRMQQFKRADPERLQHASERCSLESAVEENLPKG
PREEMTAGDGVPWLPATESDAAVALALQQEFGQEQASLPDENLEETGLFFCQICQKNLSA
MNVTRREQHVNRCLDEAEKALAPTTPRIPECPICGRPFLTLKSRISHLKQCAVNMDVGPQ
LLLQAVRLQTVPPEGACGTLASSFSHHAGGLKRRGATNQKELQRKRRVTKPEAPSEDLLV
AMALSRSEMEQEAVPAVLRLGNAFSERIRLGAEKKNRKRKAPISPPPLLVQDPETTGRLM
ADRVAQLFAEEVELSSTPPLPTSRILKEELGKAGRCLRPPGGKQNFLWEGSALTGAWALE
AFYTASLVPPMVPQRPAKALTQEPMLLPGLPGQPELGVQTPPAVPSAHPAGHGPRSPGPS
ASQREHQALQDLVDLAGEGMNASPWPCSGGPASPGGVAGMDLSPTGLPLTGFIPPSQEEQ
LERGGQTSLTLSLLLADFRAMVNNPQLSDIQLQTDSGEVLYAHKFVLYARCPLLMQYVNS
EGFFAVEDGDVKSQRALLGGVSAEAARALLHYLYTADPGVPPRLVPGLSALARRFGVSEL
VLLCEQEPDVMGSEDRPRKEKEDEDCESRAENFQELLRSMWIKEEEEAEASLKSEGCEED
REKVDEAEMEEIYEFAATQRKLLRGESTPEVKEETDRFGEDGPLSAQISLSVQVHEQPEN
AEEMGLCDQRRDEAPVKWKSVGPSTPVRLKGHGADVETAGSPEEALGRPGSSRPSRGGRT
GRKEGAFWCSAAAATEQPFSSTPRRCPEPSQTTSELQEDNGTATRKGAESPCTPAHQQAP
PLRPCLSKLLQGRSPGRPHPCPRPHHTGQSPSGASRAASQDSPSKQRRGRSLCKLLKDPG
LQKGKERGSLLECRNKGALVSPEKSPSIDLTQSKPDHLSSRSQNTPSSKNREDEIILLLD
SDEELELEQTKTKSVLDGPLEERKVLEVSTKSSELFSVIDVDADQDSFQSPPRREAELLC
GEERPPGSQGSGEGRGTPQLFCDPESGPEEDSTTDASWLVPATPLASRSRDSSSQTQITG
LRSRALVDHMAQFKPWASLENRDRPEAANTCSMARPQMSPPHLGPIIAGSPDSRGPCSPH
PGRLQHFAPLAACPISGGLADSTGRLRKRSPLGPSLLNQATASEVVEVEDSEDEREVANS
SPLPDNDPPIPLDDCHWHMEPLSPIPIDRLNLELTGPLSTSSPSGYSHSPALSGTTPIRG
SLAGQRKAPEKSPRAGSPGSSRQSFLNSTLWDHWDEKEQTSPELLPAAQTPSADEAQKSE
GLETPKGAHWKNLPPKEPITPMPRYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQY
THQTLESDSENESQSSRVLLEAPHSQTQASKTSKGSSHQENPPGGSLPPMSREEPPGPDG
DAQLPASQESVASSVDSSDSSFNSQSSSCEFGVAFESAGDEEGQEEISASQTAAQTAATE
EAVRRYIRSRPALYRKVLLYQPFELAELQAELKQHGIRMALGKLLDFLDAHCITFTTSAA
RKEKLQRKRRQPVGKKKRGRAAGQSAPPHPRPSAACERLQPPSASQASTGVSGPGDHINP
P
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtcagacgacgattttaaggagctctgcgccacctttctccaaagggtg
aaaaagaatggcaccaaggaagtgtcgggggaaaggaagacacaaaaggcctcaaacagc
actgagacaagtaaaccgaaaaggaccaaaccaactgctaccaagagcaaaacccttcaa
ggccccagggagaagaaaactcggtctggcagccagggcccgaggactaaaaggcaaggg
gcacccaagtggcaggagagcaaaccagctccccctgagaatggagggggaggtgtgcct
gcctctgctgtgctccaggagaatgtgcagaacacccagacagaggacgctcgggacagc
gactcccagccccctccttcccatctgactgcaatggggcccagtccctccaaaccccgg
acggccgagctcgtcctgcagcgaatgcagcagttcaagagagcagatcctgagcgcctg
cagcatgcttccgaacggtgctccctggagtctgcagttgaagaaaacctcccgaagggc
cctcgagaggagatgacggcaggggacggtgtgccctggctccctgccacagagagtgac
gcggcggtggccttggccctgcagcaggagtttgggcaggaacaagcatcgttacctgat
gagaacctggaggagacagggttgttcttctgccagatctgtcaaaagaacctctcagcc
atgaacgtgacacggagggagcagcatgtgaaccggtgcttggatgaggctgaaaaggca
ctggcacccaccacaccgcggatccccgaatgcccgatttgtgggaggccgtttctcacc
ctgaagagcagaatcagtcacctgaaacagtgtgcggtgaacatggacgtgggcccccag
ctcctgctccaggccgtgcggctgcagacggttccgccggagggggcctgtggcacactg
gcatcaagcttcagccatcacgctggaggtctgaagcggaggggagccaccaaccagaag
gagctgcagaggaagcggagggtcaccaagcctgaggcgccgtccgaggacttgctggtg
gccatggccttgtcccggtctgagatggagcaggaggctgtgccagcggtgctcagactg
ggaaatgccttttctgagaggataagactgggagcagaaaagaagaaccgcaagaggaag
gcgcctatttcccctcccccgttgttagtccaggacccggagaccacggggaggctgatg
gcggatcgggtggcccagctctttgccgaggaggtggagctgtccagcacgccgccactt
cccacgagcaggattctaaaggaagagctgggaaaggccggtcggtgtctgcggccacct
ggagggaagcagaactttctgtgggaaggcagcgccctgactggagcctgggccctggaa
gccttctacacggcaagcttggtccctcccatggtgccccagcggcccgcaaaggctctt
acacaggagcccatgctcctcccagggctgcctggccagccagagctgggagtgcagacg
ccacctgctgtccccagtgcccaccctgcaggccatggccccaggagcccaggcccctcc
gccagccagagggagcaccaggccctgcaggaccttgtggacctggcgggagaggggatg
aatgccagcccatggccctgcagtgggggaccagccagcccaggaggggttgcagggatg
gatttgtcacccactggccttccactgactgggtttatcccgccatcccaggaagagcag
ctggagaggggcggccaaacttcgctcaccctcagtttgctgctggctgacttcagagcc
atggtcaataacccacagctgagcgacatccagcttcagacagacagcggggaggtgctt
tacgcccacaagttcgtgctttatgcccgctgcccccttctcatgcagtatgtgaacagc
gaaggcttcttcgccgtggaggacggtgacgtgaagagccagcgcgcgctgctgggtggc
gtgagcgccgaggctgcccgtgcgctcctgcactatctctacaccgcggaccccggcgtg
cctccccggctggtgcccggcctgagcgctctggcccgcaggttcggcgttagcgagctt
gttcttctgtgcgaacaagagcctgatgtgatgggttcagaggacaggccacggaaggag
aaggaagacgaggactgtgaaagccgggcggagaacttccaagaactcttgaggtccatg
tggataaaggaagaggaagaagcagaggcttcattgaaatccgagggctgtgaagaagac
agagaaaaagtggatgaggcagaaatggaagagatttatgaatttgcagccactcagcgc
aagctgctccggggggagagcactccagaggtcaaggaagaaacggaccggttcggggag
gatggtcccttgtctgcacaaatctcattaagtgttcaggttcacgaacagccggaaaat
gcagaagagatgggactgtgtgaccagagaagagatgaggccccggtcaaatggaagagc
gtgggaccgtccacgcccgtgcgactcaagggccatggtgcagatgtagagacagcaggg
tccccagaggaagcactggggcgtcccggctcctctcgcccttctcggggcggccggaca
gggagaaaggaaggtgcgttttggtgctcggctgctgctgccactgaacagcccttttca
tcgactcccagaagatgccctgaaccgtcgcagacaacaagtgagctccaggaagacaat
ggcacggccacgagaaagggggcggagagtccttgtacccctgcccaccagcaggcaccc
ccgttgcgcccgtgcctgtcgaagctccttcaaggcaggagtcctggccggccacaccct
tgccctcgccctcatcacaccggccagtcgcccagcggagcttctagggcagcctcccag
gactcaccatccaagcagaggaggggcaggagcctctgcaagctacttaaagatccaggc
cttcagaaaggcaaagaacgtggttccttgttggaatgcagaaataaaggggctctggtg
tccccagaaaaatctccatccattgacctcacccaatcaaaacctgatcatttgagctcc
cgatctcagaatactccatccagcaagaacagagaagatgaaattatccttttactggac
tcagatgaagagctggagctggaacaaaccaaaacaaagtcagttcttgatggtcccctg
gaagaaaggaaagtgctagaagttagcaccaagtcttctgagctgttttccgtcatcgac
gttgatgcagatcaggattctttccaaagcccaccacgaagagaggcggaactgctgtgt
ggggaggagaggccgccagggagccagggctcaggggagggcagagggacccctcagctg
ttctgtgaccccgagagcggccctgaggaggacagcaccacagacgcctcatggctggtg
cccgccacccccctggctagcagaagccgtgactcttcatcccagacccaaataacaggc
ctcaggtccagggctttagtggatcacatggcccagttcaaaccctgggcctccctagaa
aacagggatagacccgaagctgcaaatacgtgttcgatggccaggccccagatgtcgcca
ccgcacttgggccccatcattgcaggaagccccgacagcaggggcccatgcagtccccac
cccgggcgcctccagcactttgctcctctggcggcctgtcccatctcagggggcctcgcc
gattccacggggcggctccggaagcgctcgcccctcgggcccagcctgctgaatcaggcc
accgcgagtgaggtggtggaggtggaggacagcgaagacgagcgggaggtggccaacagc
agccccctgccggacaacgaccctccgatccctcttgacgactgccactggcacatggag
cccctctctccgattccgatcgaccgcttgaatcttgagctgacggggcccctgagcacc
agtagtcccagcggttacagccactccccggccctctcgggcaccacccccatccgagga
agccttgcgggccaaagaaaggctccagagaagtcccctcgggccggctcgcctgggagc
agcaggcagagctttctgaactccactctgtgggaccactgggatgaaaaagaacagacg
tctccagagctccttcctgcggcccagacgccgagtgctgatgaagctcagaaatcagaa
gggttagagacgccaaaaggtgctcattggaagaacttgcccccgaaagagcccataacc
ccaatgccaaggtattccatcatggagaccccggtactgaagaaagaactggataggttt
ggcgtccgccctctacccaaacgccagatggtcctgaaactgaaggagatattccagtac
actcaccagactctggagtcagactccgagaatgagagccagtcctcacgggtgctcctg
gaggcgcctcacagccagacccaagccagcaagacgtccaagggctcctcccatcaagag
aatcctcctggtggaagcctccctccaatgagcagggaggagcctccaggccctgatggt
gacgcccagctcccagcctcccaggaatcagtggcctcctccgtggacagcagtgacagc
tcctttaactcacaaagttcttcctgtgagtttggagtggcctttgagtctgcaggggat
gaagagggtcaagaggagataagtgcatcacagacggccgcccagacggcagccacggag
gaggcagtgaggcgctacatccgctcccggccggccctctaccgcaaggtcctgctctat
cagccctttgagttggccgagctgcaggccgagctgaagcagcatggcatccgcatggcc
ctggggaagctgctggatttcctggatgcccactgtatcaccttcaccacctccgcggcc
cggaaggagaagctccagaggaagaggcggcagcccgtgggcaagaagaagcggggcagg
gccgcgggccagtccgcccctccccacccgcggccgtccgcagcctgtgagcgtctgcag
cccccctcggcgagccaggcctccacgggcgtttcggggcctggggatcacatcaacccc
ccgtga
DBGET
integrated database retrieval system
