Prionailurus viverrinus (fishing cat): 125155031
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Entry
125155031 CDS
T09889
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125155031 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125155031 (SMG7)
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125155031 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
125155031 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
125155031
NCBI-ProteinID:
XP_047695779
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All DBs
Position
F1:complement(22184697..22275983)
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AA seq
1186 aa
AA seq
DB search
MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTKWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNKSQEESYNAYP
LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSTNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRQIRQQRLISIGKWIADNQPRLIQCENEV
GKLLFITEIPELILEDPSEAKENLILQETSMIESLAADGNPGLKSVLSTGRNLSNNCDTG
EKPMVTFKENIKPREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNNKRKTETKKCTL
EKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVTQTPSQASNSQFIPIHHPGAFPPLPS
RPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ
QRPSGPGPMNQGPQQPQPPSQQPLTSLPAQPTAQSTSQLQVQALAQQQSPTKAVPALGKS
PPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQSYYLQPQDPIKLFEPSLQPPVMQ
QQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRAVMAQQASVDRRGKRSPGVF
RPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPGR
SLFKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTTSSKTELNPSLA
PQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGP
IGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSASESSWHQASTPSGTWTGHGPSMEDS
SAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcagagcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattctaagctgggtccagctgaggtctggacatccaggcaggctctgcaggacctgtac
cagaaaatgctagttactgatttggaatacgctttagacaagaaagtagaacaggatctc
tggaatcatgcctttaagaatcagatcacaacactacaaggccaggcaaagaatcgagca
aacccgaatcggagtgaagttcaggcaaacctatctctgttcctagaggcagctagtggc
ttctatactcagttattacaagaactgtgtacggtgtttaatgtagatttaccatgccgt
gtgaagtcttcccaattgggaattatcagcaataaacagacgcataccagcgccatagtg
aagccacagtctagctcctgttcttatatctgccagcactgcctcgtccaccttggagac
attgctcgatacagaaaccagaccagccaggcagagtcctactataggcatgcagctcag
cttgtcccctctaatggtcagccttacaatcagttggctatcttagcttcttccaaagga
gaccatctgaccacaattttctactactgcagaagcatcgctgtgaagttcccgttccca
gctgcctccactaatctacaaaaagcactttctaaagcactggaaagccgggatgaggtg
aaaaccaaatggagtgtttctgacttcatcaaggcctttattaaattccacggtcatgtg
tacctgagtaagagcttggaaaagttgagcccacttcgagagaaattggaagaacagttt
aagaggctgctgttccaaaaagctttcaactctcagcagttagttcacgtcactgtcatc
aacctgtttcaacttcatcaccttcgtgactttagcaatgaaacagagcagcatagttat
agccaagatgagcagctgtgttggacacagttgctggccctctttatgtcttttcttggc
atcctgtgcaagtgtcctctccagaacaagtctcaggaggagtcctacaatgcctatccc
cttcctgcagtcaaggtctccatggactggctgagactcagacccagggtctttcaggag
gcagtggtagatgaaagacagtacatttggccctggctgatttctcttctaaatagtttc
catccccatgaagaggatctttcaagtactaatgctacaccacttccagaggagtttgag
ttacaaggattcttggctttgagaccttctttcaggaacttggatttctccaaaggccac
cagggcattacaggagacaaagaaggtcagcaacgacaaatacgacagcagcgcttgatc
tctataggcaaatggattgctgataatcagccaaggctgattcagtgtgaaaatgaggta
gggaaattgttgtttatcacagaaattcctgagttaatactggaagaccccagtgaagcc
aaagagaacctcattctgcaagaaacatccatgatagagtcactggctgcggacgggaac
ccaggactgaaatcagtgctgtccacgggccgtaatctaagcaacaactgtgacacagga
gagaaaccaatggtcaccttcaaagagaacattaagccgcgcgaagtgaacagagaccaa
ggaagaagttttcctcccaaagaggtgagaagggactatagcaaaggaataactgtaact
aagaatgatggaaagaaggacaacaacaagaggaaaacagaaaccaagaaatgcacctta
gaaaagttacaggaaacaggaaagcagaatgtggcagtgcaggtgaaatcccagacagaa
ctaagaaagactccagtgtctgaagccaggaaaacacctgtaactcaaaccccaagtcaa
gcaagtaactcccagttcatccccattcatcaccctggagccttccctcctcttcctagc
cgcccagggttcccgcccccaacatatgttattccccctcctgtggcattttctatgggc
tcaggttacaccttcccagctggtgtttctgtcccaggaacctttcttcagcctacagct
cactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccag
caacggccctctggaccagggccaatgaaccagggacctcaacagccacagccaccttcc
cagcaaccccttacatctttaccagctcagccgacagcacagtccacaagccagttgcag
gttcaagctctagctcagcagcaatcccccacaaaagccgtgccggctttggggaaaagc
cctcctcaccactctgggttccagcagtatcaacaggcagatgcctccaaacagctgtgg
aatccccctcaggttcaaggcccattagggaaaatcatgcctgtgaaacagtcctactac
cttcagccccaagaccccataaaactgtttgagccgtcattgcaacctcctgtaatgcag
cagcagcctctagagaaaaaaatgaagccttttcccatggagccatataaccataatccc
tcagaagtcaaggtcccagagttctactgggattcttcctacagcatggctgataacaga
gctgtcatggcccagcaagcaagtgtggaccgcagaggcaaacggtcaccaggagtcttc
cgtccagagcaggatcctgtgcccaggatgccatttgaggaccccaagagctcccctctg
cttcctccggacctgttaaagagtctggctgccttggaggaagaggaagagctgattttt
tctaaccctcctgatctttacccagctctgctgggccctctcgcctctcttcctggacgg
agcctctttaaatccttgttagagaagccctcggagctcatgtcacactcatcctctttc
ttgtccctcaccggattctctctcaatcaggaaagatacccaaataacagtatgttcaat
gaggtatatgggaaaaacctgacaaccagctccaaaacagaacttaatccttcgctggcc
ccccaggagacatcactgtactccctctttgaagggaccccgtggtctccatcacttcct
gccagttcagatcattcaacaccagccagccagtctccccattcctctaacccaagcagc
ctgccgagctcccctccaacacataaccataattctgttccattctccaactttggacct
atcgggactccagataacagggataggagaactgcagatcggtggaaaactgataagcca
gccatgggtgggttcggcattgattatctctcagcaacatcagcctctgagagcagttgg
catcaggccagcactccaagtggcacctggacaggccatggcccctccatggaggattcc
tctgctgtcctcatggaaagcctaaagtctatctggtccagttccatgatgcatcctgga
ccttccgctctggagcagctgttaatgcagcagaaacagaaacagcagcgaggacaaggc
gccatgaaccctccacactga
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integrated database retrieval system
