Prionailurus viverrinus (fishing cat): 125159170
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Entry
125159170 CDS
T09889
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv05016
Huntington disease
pviv05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125159170 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
125159170 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125159170 (HTT)
04131 Membrane trafficking [BR:
pviv04131
]
125159170 (HTT)
03029 Mitochondrial biogenesis [BR:
pviv03029
]
125159170 (HTT)
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125159170 (HTT)
Membrane trafficking [BR:
pviv04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
125159170 (HTT)
Mitochondrial biogenesis [BR:
pviv03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
125159170 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
125159170
NCBI-ProteinID:
XP_047703105
LinkDB
All DBs
Position
Unknown
AA seq
3138 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQQQQQPQPPPPPPQPPQPLPQAQPPPPQPQPPP
PPPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIA
MELFLLCSDDAESDVRMVADECLNRVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALW
RFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAVPKIMASFGNFANDNEI
KVLLKAFIANLKSSSPTIRRTAAGSAVTICQHSRRTQYFYSWLLNVLLGLLVPVEDEHST
LLILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVCPSTEQLIQVYELTLHYTQHQ
DHNAVTGALELLQQLFRTPPPELLQALTAPGGGQRSGVQYGPGGRSRSGSIAELLAGGGS
SCSPVLSRKQKGKVLFGDAAALEDDSESRSEGSSPAFAASVKGEIGGELAASSGVSTPGS
AGSAADSVGHDIITEQPRSQHTLQPDSVDLTGCDLASAATDGDEEDILSHSSSQISAVPS
DPAMDLNDGTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYSGMQIGQPQDED
EEAAGILPEEDVDAFRNSAAALQQAHLLKSMGHSRRPSDSSVDTFVSRDEAAEAGDQENK
PCRIKGDIGQSTDDDSVPLVHCVRLLSASFLLTGEKNVLVPDRDVRVSVKALALSCVGAA
VALHPESFFSKLYKVPLDSVEYPEEPYVSDILNYIDHGDPQVRGATAVLCGTLISSTLSR
SRFQVGDWMGTVRALTGNTFSLEDCIPLLRKTLKDESSVTCKLACTAVRHCVMSLCSSSS
SELGLQLITDVLSLRDSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLK
LQDRVLHDVVIYLLGDEDPRVRHVAAAALMRLVPKLFYKCDQGQADPVVAVARDQSSVYL
KLLMHETQPPSHFSVSTITRIYRGYNLLPSMTDVTVENNLSRVIAAVSHELVTSTTRALT
FGCCEALCLLSTAFPVCVWSLGWHCGAPPLSVSGESRKSCTVGMATVILTLLSSAWFPLD
LAAHQDALVLAGNLLAASAPRSLRSSWTSEEEANPAAAKQEEVWPALGDRTLVPMVEQLF
SHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASAPLSPKK
GSEASPASRQSDASGPVTANKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSAEK
FGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGT
NLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAE
QDHDASGWFDVLQKVSTQLKTNLTSTTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSV
QLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLV
LLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGANKADAGK
ELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKESEDKWKRLSRQIADVILPMLAKQQ
MHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMAPVSTVQLWISGILAILRV
LISQSTEDIVLSRIQELSFSPYLISCPIINRLREGDSTSTPEEHSEGRQMKSLPEETFSR
FLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAASRL
LTVDSSDSSFYGLDRLNAQVRAMVPTHPALVLLWCQILLLVSHTDHRWWAEVQQTPRRRS
LSSTKSLSPQMSGEEGDSDAAGKPGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVN
HIQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSAPTTLKKTLQCLEGIHL
SQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSSMAQLPVEELTRIQEY
LQSSGLAQRHQRLYSLLDRLRLATAPGSRGPSPPVTSHPLDGDGPLALETVIPDKDWYLR
LVKSQCWTRSDSALLEGAELVNRIPPSDMSTFMMNSEFNLSLLAPCLGLGMREVSGGQRS
PLFEAARLATLDRVTGLVQQLPAAHHVFQPFLPTEPTAYWNKLNDLFGDAVLYRSLTTLA
RALAQYLLVFSKLPGHLHLPPEKERDMVKFVVMTLEALSWHLIHEQIPLSLDLQAGLDCC
CLALQLPSVWSALSSPEMVTHACSLIHCVRFILEAIVVQPGDQLLSPDRRMNTPKAARED
EVDSNTQNPAYITAACGMVAEMVEALPSVLALGHKRNSSTPAFLTSVLRNIIISLARLPL
VNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQF
EETWATLLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAV
SCLEQQPRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENVATHHLYQAWDPVPSLS
PATTGALIGHDKLLLQINPERELGNMSYKLGQVSIHSVWLGNSITPLREEEWEEEEEEEA
DVPTSASPPTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSGSARRTPIILISEVVRSL
LVVSDLFTERTQFEMMYLTLTELRRAHPAEDEILIQYLVPATCKAAAVLGMDKAVAEPVS
RLLESTLRSSHLPSRVGALHGALYVLECDLLDETAKQLVPVISDYLLSNLKGAAHCVNVH
SQQHVLVMCATAFYLIENYPLDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCVLRGLER
LLLSEQLCRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPSPA
APDSESVIVAMERVSVLFDRVRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSN
QQPYPQFMATVVYKVFQTLHSSGQSSMVRDWVMLSLSNFTQRSPVAMAVWSLSCFFVSAS
TSPWVSAVLPHVISRMGKLERVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAAPGN
PYHRLLTCLRNVHKVASC
NT seq
9417 nt
NT seq
+upstream
nt +downstream
nt
atggcgactctggaaaagctgatgaaggccttcgaatcgctcaagtctttccagcagcag
cagcagcagcagcagcagcagcagcaacagcagcagccgcagccgccgccgccgccgcct
cagcctcctcagccgctgccgcaggcgcagccgccgccgcctcagcctcagccgccgccc
ccgccgccgcccccgccgccccccggcccggccgtggccgaggagccgcttcaccgacca
aagaaagaactctcagccaccaagaaagaccgtgtgaatcactgtctgacgatatgtgag
aacatagtggcacagtcactcagaaattctccagaatttcagaaacttctgggcatcgct
atggaactcttcctgctgtgcagtgatgatgcagagtcggatgtcaggatggtggctgac
gagtgcctcaacagagtcataaaagcgctgatggactcgaatcttccgcggttacagctt
gaactctataaggagatcaaaaagaatggcgccccccggagcctgcgtgctgccctgtgg
aggtttgcggagctggctcacctggttcggcctcagaaatgcaggccttacttggtaaac
cttttgccttgcctgactcgaataagcaagagacccgaggaatctgttcaggagaccttg
gctgcagctgtacctaaaattatggcttcttttggcaattttgccaatgacaatgaaatt
aaggttctattgaaggctttcatagcgaatctgaagtcaagctcgcctaccattcggcgt
actgcagctggctcagcagtgaccatctgccagcactccagaaggacgcagtacttctat
agctggctactgaacgtactcctgggcttgctggttcctgttgaggacgaacactctacc
ctcctgattctcggagtgctgctcacgttgaggtatttggtgcccttgctgcagcagcag
gtcaaggacacaagcctgaaaggcagctttggggtgacacggaaagaaatggaagtctgt
ccctcaactgagcagctcatccaggtttacgaactgaccttgcattacactcagcaccaa
gaccacaacgccgtgactggggcgctggagctcctgcaacagctcttcaggacgcccccg
cccgagctcctgcaggccttgaccgcgccgggcggcgggcagcggagcggcgtgcagtat
gggcccggcggccggagccgcagcggcagcatcgcggagctcctagccggagggggttct
tcatgcagccctgtcctttcaagaaaacaaaaagggaaagtgctcttcggagacgcagca
gccttggaggatgactccgagtccaggtcggagggcagcagccccgccttcgcagcctca
gtcaagggtgagattggtggtgagctggcggcctcttctggagtctccactcctggctcc
gccggttcggctgccgactccgtggggcacgacatcatcaccgagcagccccgctcacag
cacacgctgcagccggactcggtggatctgaccggctgtgacttggcgagtgctgccacc
gacggggatgaggaggacatcctgagccacagctctagccagatcagtgccgtcccgtct
gacccagccatggacctgaacgatggcacccaggcctcctccccagtcagtgacagttcc
cagaccaccaccgaagggcccgattcggctgtgaccccttcagacagttctgaaatcgtg
ttagatggggccgacagccagtattcggggatgcagatcggacagccacaggacgaggat
gaggaggccgcgggcattcttccggaggaagacgtagatgctttccgaaactccgcagct
gcccttcagcaagcacatttattgaaaagcatgggccacagccggcggccctccgacagc
agtgtggatacgtttgtctcaagagacgaagctgccgaagcaggagatcaagaaaacaag
ccttgccggatcaaaggtgacataggacagtctaccgatgacgattctgttcctcttgtc
cattgtgtccgccttctgtcggcttcgtttttgctgacgggggagaagaatgtgttggtt
ccggacagggacgtgagggtcagcgtgaaggcactggcactgagctgtgtgggagccgct
gtggcccttcatcctgagtctttcttcagcaaactttacaaagtacctcttgactcggtg
gagtaccctgaggagccatatgtgtcagacatcctgaactacatcgatcatggagacccc
caggtcagaggagccacggccgttctctgtgggaccctcatctcctccaccctgagcagg
tcccgcttccaagtgggagactggatgggcaccgttagagctctgacaggaaatacattt
tctctggaggactgcattcctttgctgcggaaaactttgaaggatgaatcttccgtcact
tgcaagttggcctgcacagctgtgaggcactgtgtcatgagtctgtgcagcagtagctcc
agtgaactgggactgcagctgatcaccgatgtactgagcctgagggacagctcctactgg
ctggtgaggacagagcttttggagacgctcgcagagattgactttaggttggtgagcttt
ttggaggcaaaagcagaaaatctacacagaggggcccatcattacacagggcttttaaaa
ctgcaggaccgagtgctccatgacgtcgtcatctacttgctcggggacgaagaccccagg
gtgcgacacgttgccgcagctgcgctgatgaggcttgtcccgaagctgttttataaatgt
gaccaaggacaggccgacccagtggtggctgtggcgagagaccaaagcagcgtttacctg
aaacttctcatgcacgagactcagcccccatctcacttctccgtcagcaccataaccaga
atatacagaggctataacctactgccgagcatgacagacgtcactgtggaaaataacctc
tcgagagtcattgcggcagtttcccacgagctggtcacgtcgaccacgcgagcacttacg
ttcggatgctgcgaggctttgtgtcttctttccactgcctttccagtctgcgtttggagt
ttaggctggcactgtggggcacccccactgagcgtgtccggtgagtccaggaagagctgt
actgttggcatggccacggtcatcctcaccttgctctcgtcagcttggttcccgctggac
ctcgcagcgcaccaggatgcactggtgctggccggaaacctgctcgcagccagtgccccc
agatctctgagaagttcgtggacctctgaggaagaggccaacccagcagccgccaagcag
gaagaggtctggccggctctgggtgaccggaccctggtgcccatggtggagcagctcttc
tcccacctgctgaaggtgattaatatctgcgcacacgtgctggacgatgtggctcctgga
ccggcaataaaggcagccttgccgtccctaacaaaccctccttctctaagtccgatccgc
cggaagggaaaggagaaagagccgggagagcaggcctctgcgcccttgagccccaagaaa
ggcagcgaagccagtccagcctctcgacaatccgacgcctcagggcctgttacagcaaat
aagtcctcatcactggggagtttctaccaccttccttcatacctcaaattgcacgatgtc
ctgaaagctactcacgctaactataaggttaccttggaccttcagaacagtgctgaaaag
tttgggggctttctgcgttctgccttggatgtgctctctcagatcctagaattggcaaca
ctgcaggacatcgggaagtgtgtcgaggagatcctaggctacctgaaatcctgtttcagt
cgagaaccgatgatggcaactgtttgtgttcagcagttgctgaagactctctttgggaca
aacttggcctcccagtttgatggcttgtcttccaaccccagcaagtcccagggccgagcg
cagcgtctgggctcctccagcgtgaggccgggcttgtaccactactgcttcatggctccc
tacacccacttcacccaggccttagccgacgccagcctgaggaacatggtgcaggcagag
caggaccacgacgcctcagggtggtttgacgtgcttcagaaagtgtctacccagttgaag
acgaacctcaccagcaccactaagaaccgcgcagataagaacgctattcacaatcacatt
cgtttgttcgagcctctggttataaaagctttaaagcagtacacaaccacaacgtctgtg
cagctacagaggcaggtcttagatttgctggcacagctggttcagttacgggtcaattac
tgtcttctggattcagatcaggtgtttattggatttgtgctgaagcagttcgaatacatt
gaagtaggccagttcagggaatcagaggcaattattccaaacatctttttcttcctggta
ttactgtcttacgagcgctatcattcaaaacagatcattggaatccctaaaatcattcag
ctctgtgacggcatcatggccagcgggaggaaggctgtgacacatgccataccggctcta
cagccgatagtccatgacctgtttgtactgagaggagccaataaagctgatgcaggaaaa
gagctcgaaacccagaaagaagtggtggtgtccatgctgctgagactcatccagtaccat
caggtgctggagatgttcatcctggtcctgcagcaatgccacaaggagagcgaggacaag
tggaagcggctgtcccggcagatcgccgacgtcatcctcccgatgttggccaagcagcag
atgcacattgattctcacgaagccctcggcgtgttaaatactttatttgagattctggcc
ccttcctccctccgtcccgtggacatgcttttacggagtatgttcgtcactccagacaca
atggcacctgtgagcactgttcagctgtggatatcaggaatcctagccattttgagggtt
ctcatctcgcagtcaactgaagacattgttctttctcggattcaggagctctctttctct
ccatatttaatctcctgtccgataattaataggctaagagagggggacagtacttcgaca
ccggaagaacacagtgaagggagacaaatgaagagcttgccggaagaaacattttcaaga
tttctactacaactagttggcattcttttggaggatattgttacaaagcagctcaaagtg
gaaatgagtgaacagcaacatactttctactgccaagaactgggcactctgctgatgtgt
ctcatccacatcttcaagtctggaatgttccgtaggatcacagcagccgcctccagactc
ctcacggtggacagcagcgacagcagcttctacggcctggacaggctgaacgcgcaggtg
cgcgccatggtgcccacgcatccggcgctcgtgctgctctggtgccagatcctgctgctc
gtcagccacaccgaccaccgctggtgggcagaggtgcagcagacccccaggagacgtagt
ctgtccagtacgaagtcactcagcccccagatgtccggagaggagggggactccgatgcg
gccggtaaacccggaatgtgcaacagagaaatagtgcggcggggagctctcattctcttc
tgcgattatgtctgtcagaacctacacgattcagagcacttaacgtggctcatcgtgaat
catattcaggacctgatcaatctgtcccatgagcctccggtgcaggatttcattagtgct
gttcaccggaactccgccgccagcggcctcttcatccaggcaattcagtctcgttgtgag
aacctttcagcccccaccaccctgaagaagacgcttcagtgcttggaagggatccacctc
agccagtcgggcgccgtgttaacactgtatgtggacaagcttttgtgcaccccgttccga
gtgctggctcgcatggtcgacacccttgcctgtcgccgcgtggaaatgcttttggccgca
aatttgcagagcagcatggcccagttgccggtggaggaactaaccagaatccaggaatac
cttcagagcagcgggctggctcagagacaccagaggctgtactccctgctggacaggctt
cgtcttgctaccgcaccgggctcccgtggcccttctcctccagtcacgtcccacccgctg
gacggggatgggcccctggccctggagacagtcattccagacaaagactggtacctacgt
ctagtcaaatcccagtgctggactaggtcagattctgcgctgctggaaggggcagaactg
gtgaatcggattcctcccagtgacatgagcacgttcatgatgaactcggaattcaactta
agcctgttggcgccgtgcctgggccttggcatgcgtgaagtctccggaggccagaggagt
ccacttttcgaagcagctcgcctggcgactctggaccgtgtgaccggcctggtgcagcag
ctccctgccgcccaccacgttttccagccgttcctgcccacagagcccaccgcctactgg
aacaagttgaatgatctatttggggatgctgtgttgtatcgctccttgaccactctggcc
cgggctctggcccagtacctgctggtattctccaaactgcccggccacttgcaccttcct
cctgagaaggagagggacatggtgaagtttgtggtcatgaccctcgaggccctgtcgtgg
catttgatccatgagcagatcccgctgagtctggaccttcaggcgggcctggactgctgt
tgcctggccctgcagctgcccagcgtctggagcgcactctcctccccagagatggtgacc
cacgcctgttctctcatccactgtgtccgcttcatcctggaagccattgtggtgcagcct
ggggaccagcttcttagtccagaccgaaggatgaacaccccaaaggctgccagagaggac
gaagtagattcaaacacacaaaacccggcctatattaccgcagcctgtgggatggtggca
gagatggtggaggctttgccgtcggtgttggccttgggccataaaaggaatagcagcacc
ccagcgtttctcacatcggtgctcaggaacatcatcatcagcctggctcgcttacccctc
gtcaacagctacacgcgcgtcccccccctggtttggaaacttggatggtcacccaaaccg
ggaggggattttggtacggcgtttcctgagatcccagtggagttcctccaggagaaggag
gtctttaaagagttcatctatcgcatcaacactctagggtggaccagccgcacccagttt
gaggaaacgtgggccaccctcctcggtgtcctggtgactcagcccctcgtgatggagcag
gaggagagcccgccggaagaagacacggagaggacccagatcaacgtcctggccgtgcag
gccatcacctcactggtgctgagtgcgatgactgtgcccgtggccggcaacccggccgtg
agctgcctggagcagcagccccggaacaagcccctgaaagctctcgacaccaggtttggg
aggaagctgagcattatcagaggaattgtggagcaagaaatccaagcaatggtttcgaag
agagagaatgtcgccacccatcacttgtaccaagcgtgggaccccgtcccttctctctct
ccagctactacaggtgccctcatcggccacgacaagcttctgctgcagatcaaccctgag
cgggagctgggaaacatgagctacaagctcggccaggtgtccattcactccgtgtggctg
gggaacagcatcacgcccctgagagaggaagagtgggaggaggaggaggaggaggaggcc
gacgtccccacgtctgcatcaccacccacatcgccggtcaactccaggaagcaccgggct
ggagtcgacatccattcctgttcccagtttttgcttgaattgtatagtcgctggatcctg
ccgtcagggtcagccagaaggacccccatcatcttgatcagcgaagtggtccgatctctc
ctagtggtctcagacttgttcactgagcgcacccagtttgagatgatgtatctgacgctg
accgagctgaggagggcgcaccctgcagaagacgagattctcattcagtacctggtgcct
gccacctgcaaggcggctgccgtcctcggaatggacaaggccgtggccgagcctgtcagc
cggctgctggagagcacactgaggagcagccacctgcccagcagggtcggggccctgcat
ggcgccctctacgtgctggagtgtgacctcctggatgagacagcgaagcagcttgtccct
gtcatcagcgactacctcctgtccaacctcaaaggggcagcccactgcgtgaatgttcat
agccaacagcacgtgctggtgatgtgtgccaccgccttctacctgattgagaactatccc
ctggacgtaggcccagaattctctgcgtcagtaattcagatgtgtggggtgatgctgtcc
gggagtgaggagtccactccgtccatcatttaccactgcgtcctgcggggcctggagcgt
cttctgctctccgaacagctgtgccggctggatgccgagtccctggtcaagctgagtgtg
gacagagtgaacgtgcatagcccgcaccgggccatggctgccctgggcctgatgctcacc
tgcatgtacacagggaaggagaaaatcagcccaggcagaacctcagaccccagccccgcc
gccccagacagcgagtccgtgatcgtggctatggagcgtgtgtccgttcttttcgacagg
gtcaggaaaggattcccctgtgaagccagagtggtggcacggatccttcctcagttttta
gatgacttcttcccaccccaggatgtcatgaacaaagtcattggggaatttctgtccaac
cagcagccatacccacagttcatggccaccgttgtgtacaaggttttccagaccctgcac
agcagtgggcagtcgtccatggtccgggactgggtcatgctgtccctctccaacttcacc
cagaggagcccggtggccatggctgtgtggagcctctcctgcttcttcgtcagtgcttcc
actagcccctgggtctccgccgtccttccccacgtcatcagcaggatgggcaagctggag
cgagtggacgttaacctcttctgcctggtggccacagacttttacagacaccagatagag
gaggagctggaccgccgggccttccagtccgtgttcgaggtggtcgcggctccgggaaac
ccataccatcgactgttgacttgtttgcggaacgtccacaaagtcgcctcgtgctga
DBGET
integrated database retrieval system
