Prionailurus viverrinus (fishing cat): 125165806
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Entry
125165806 CDS
T09889
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03013
Nucleocytoplasmic transport
pviv03015
mRNA surveillance pathway
pviv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125165806
09122 Translation
03013 Nucleocytoplasmic transport
125165806
03015 mRNA surveillance pathway
125165806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125165806
03041 Spliceosome [BR:
pviv03041
]
125165806
Enzymes [BR:
pviv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125165806
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125165806
Spliceosome [BR:
pviv03041
]
Complex C
Other components
EJC/TREX
125165806
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125165806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
DUF6423
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
125165806
NCBI-ProteinID:
XP_047715100
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All DBs
Position
B2:45211124..45212658
Genome browser
AA seq
426 aa
AA seq
DB search
MAENDVDNELLDYEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLWAIV
DCGFEHPPEVQHECIPQAILGMAVLCQAKSGMGKTAVFVLDTLQQPEPVTGQVSVLVMCH
TRELALQISKEYERFSKYMPNVKVAVFFGGXIKKDEEVLKKNCLHIIVGTPDHILALAQN
KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPNEKQVMMFSATLSKEIRPVCRKF
MQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIA
LAQLLVEQNFPAIAIHQGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNS
DMPEDSDTYLRQVARAGRFGTKGLAITFVSDENDAKILNDMQDRFEVNISELPDETDIPS
YIEQTR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagatgaggtggagacagca
gcagggggagacggggctgaggcccctgccaagaaggatgtcaagggctcctatgtctcc
atccacagctctggctttcgtgacttcctactgaagccagagttgctctgggccattgtt
gactgtggctttgagcatccaccagaagtccagcatgagtgcatccctcaggccattttg
ggaatggccgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtgctg
gacacactgcaacagccggagccagttactggacaggtgtctgtgctggtgatgtgtcac
actcgggagttggctcttcagatcagtaaggagtatgagcgcttctctaaatacatgccc
aatgtcaaggtcgcggtgttttttggtggtnctatcaagaaggatgaagaggtgctgaaa
aagaactgcttgcatatcatcgtggggacccctgaccacatcctagccctggctcaaaat
aagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataagatgctt
gaacagctcgacatgcgtcgggacgtccaggaaatttttcgcatgacccccaatgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgcaagttc
atgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcatgggttg
cagcagtactatgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctc
gatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgcattgcc
ctggcccagcttctagtggagcagaacttcccagccattgccatccaccaagggatgccc
caggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaattcttgtg
gccaccaacctatttggccgaggcatggacattgaaagggtgaacattgccttcaactct
gacatgcctgaggattctgacacctacctgcgtcaggtggcccgagcaggccggtttggc
accaagggcttggccatcacgtttgtgtcagatgaaaacgacgccaagatcctcaatgac
atgcaggatcgctttgaagtcaatattagtgagctgccagatgagacagacattccctcc
tacattgaacagacacggtag
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