Prionailurus viverrinus (fishing cat): 125165951
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Entry
125165951 CDS
T09889
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125165951 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125165951 (PNLDC1)
Enzymes [BR:
pviv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125165951 (PNLDC1)
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125165951 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125165951
NCBI-ProteinID:
XP_047715452
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All DBs
Position
B2:144446046..144464356
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AA seq
532 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNQSRPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEIQLVLRQALPNIWTVLRDQGIIVKKVSKQHRWYLENTSCDRESCWKE
KILLSARGFSVFFQMLVKAQKQPLVGHNMMTDLLHLHEKFFRPLPESYDQFKLNIHNLFP
VLIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASKCEKYAETKYP
HEAAYDAFLCGSVLLKVAHLLLWRVHGAGSLPELSFPLYLDVLAPYVNQVNLIRAGVPKI
NFSGPDYPSIRPPILLLSVRRWPGVSEQQVYREFQNLCKFDVRRLSRSQFLLLTNKFKDA
RSILREYRGHPTLQISLYRYWRHSPDINCLLQVCGVVATWALLALVLGRPDP
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctccctctgctgcaggagctcgtcctg
ggcgcggacttcgtgggtctggacatagagttcacgggccttcgttctaaccagtcccgg
ccccagcagatcagcctgttcgacctgccctcggagtggtatctcaagacccgtcagagt
gttcagcaattcacaatctgtcagattggattgtctgtgttttccagtattgaaggagag
tcaaacaagtatgtagcccattcgtgtaacttctttctcttccccacgacgtttggggtt
ttggattcggagttctctttccaggcttccagtgtccagtttctgaatcagtatggcttt
gactacaacaagtttctcaaaaacgggatcccatatatgaatgaagaacaggagaagaaa
atcaaacacaacatcctgactgggaactggaaagttcgcagttctctggataaagaccag
atcaaggtggtgattgatgaggtgacacggtggctggacctggcggaggagggcgactgg
atgactctccctggtattgccggcttccaggcctttgagatccagctggtgctgaggcag
gccctccccaacatctggacggtcctgagagaccaggggataatagtgaaaaaagtgagc
aaacagcatcgctggtaccttgagaacacctcctgcgatcgagagagctgttggaaggag
aagattcttctctctgcgaggggtttctctgtgtttttccagatgctggtgaaagcccag
aagcagcccttggtgggccacaacatgatgacagacctactgcatctgcacgagaagttc
ttccggccgctcccagaaagctatgatcaatttaagctgaatatccacaacctatttcct
gttctcattgacaccaagaacgtgacaaaggacatctggaaggaactgaatttcccaagg
gtttcaaatctctcagaagtttatgaagtcctaaacagtgacttgaatcctaccaaaaat
tccgggccagtgattattcacgcaagcaagtgcgaaaaatacgctgagaccaagtacccc
cacgaggctgcgtatgatgctttcctctgtggctcagttcttctgaaagtggcacatttg
ctcctgtggagagtacatggagctggctccctgcctgagctgtccttccctctgtacctc
gatgtgctggctccctatgtgaaccaggtgaatcttatccgagccggggtccctaagatc
aacttttctggtccagattaccccagtatccgacctcccatcctcctcctcagcgtccgg
aggtggcctggggtcagcgagcagcaagtgtatcgtgagtttcagaatctctgcaagttc
gatgtccggcgactgtcgcggagccagttcctgctcttgaccaataagttcaaggacgct
cggagcatcctgagggagtaccggggccaccccaccctgcagatctccctctatcggtac
tggagacactcccctgacatcaactgcttgttacaggtctgtggcgtggtggccacctgg
gccctcctcgctctcgtcctcggaagacctgacccctga
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